New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	728555 =	70 (1.190)	4 (0.070)	4/246	NT	5.5%	coding (44/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase
	?	NC_002947	728589 =	72 (1.300)					coding (78/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase

CAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/728709‑728555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccaATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGAGGCCGAACAAGAGGCCCAGG  >  NC_002947/728589‑728731                                                                                                                                                                                                                                                                                                            CAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGG                                                                                                                                                        <  4:144443/148‑1   GGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCCG                                                                                                                                                     >  1:195614/1‑149     GCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCC                                                                                                                                                   <  8:101545/149‑1       AAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCA                                                                                                                                                 <  7:300767/149‑1                    CCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCC                                                                                                                                                      <  5:309500/131‑1                    CCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCC                                                                                                                                                      >  6:309500/1‑131                                                                                                                       AATTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTT                                                   >  3:217477/1‑131                                                                                                                       AATTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTT                                                   <  4:217477/131‑1                                                                                                                         TTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGT                                                 <  7:28810/131‑1                                                                                                                         TTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGT                                                 >  8:28810/1‑131                                                                                                                                                      CGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGAGGCCGAACAAGAGGCCCAGG  <  5:184235/149‑1                                                                                                                                                           AATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATG                                            <  7:49632/102‑1                                                                                                                                                           AATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATG                                            >  8:49632/1‑102                                                                                                                                                                                                                                                                                                            CAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGACCTGGTCGAGGCGTTGGCCGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/728709‑728555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccaATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGAGGCCGAACAAGAGGCCCAGG  >  NC_002947/728589‑728731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.