New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1228625	55 (0.930)	4 (0.070)	4/248	NT	6.6%	coding (1805/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	= 1228645	61 (1.090)					coding (1825/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein

ATGAACTCGAAGCTCCACAGTACTGGGAAGGGCGGGCCAATCTGATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1228472‑1228625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagcaACCGTGCAGGTGCGCCCATGTGCTCGACGTGCAAACGGCGAATCTGCGCTTCACTCAGCCCTGTCACCTGGAGCAGGTAGTCACATGTCGGTTCCGGTAGCTCTGCCAGGGGCGTACTCAAACGGCGTATCAGATTGGCCCG  <  NC_002947/1228645‑1228504                                                                                                                                                                                                                                                                                                          ATGAACTCGAAGCTCCACAGTACTGGGAAGGGCGGGCCAATCTGATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTC                                                                                                                                                     >  4:276917/1‑149    AACTCGAAGCTCCACAGTACTGGGAAGGGCGGGCCAATCTGATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGA                                                                                                                                                   <  4:100810/148‑1                                    GCCAATCTGATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGAGCAACCGTGCAGGTGCGCCCATGTGCTCGACGT                                                                                                                  >  7:54083/1‑149                                    GCCAATCTGATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGAGCAACCGTGCAGGTGCGCCCATGTGCTCGACGT                                                                                                                  <  8:54083/149‑1                                            GATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGAGCAACCGTGCAGGTGCGCCCATGTGCTCGAC                                                                                                                    <  5:307492/139‑1                                            GATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGAGCAACCGTGCAGGTGCGCCCATGTGCTCGAC                                                                                                                    >  6:307492/1‑139                                                                                                                                                    TCGAGCAACCGTGCAGGTGCGCCCATGTGCTCGACGTGCAAACGGCGAATCTGCGCTTCACTCAGCCCTGTCACCTGGAGCAGGTAGTCACATGTCGGTTCCGGTAGCTCTGCCAGGGGCGTACTCAAACGGCGTATCAGATTGGCCCG  <  4:351071/149‑1                                                                                                                                                                                                                                                                                                          ATGAACTCGAAGCTCCACAGTACTGGGAAGGGCGGGCCAATCTGATACGCCGTTTGAGTACGCCCCTGGCAGAGCTACCGGAACCGACATGTGACTACCTGCTCCAGGTGACAGGGCTGAGTGAAGCGCAGATTCGCCGTTTGCACGTCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1228472‑1228625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagcaACCGTGCAGGTGCGCCCATGTGCTCGACGTGCAAACGGCGAATCTGCGCTTCACTCAGCCCTGTCACCTGGAGCAGGTAGTCACATGTCGGTTCCGGTAGCTCTGCCAGGGGCGTACTCAAACGGCGTATCAGATTGGCCCG  <  NC_002947/1228645‑1228504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.