New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1309726 =	54 (0.920)	5 (0.090)	5/250	NT	9.0%	coding (1807/2265 nt)	PP_1144	membrane protein
	?	NC_002947	1309768 =	49 (0.870)					coding (1765/2265 nt)	PP_1144	membrane protein

GGAGGTGACCGAGAACGCCCTGGTAGGGGATATCCAGCGCACGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1309772‑1309726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcaCCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCGTGACCTGGACCTCGCCGTAGCCGTGGCGCTGCAAGTGGGC  >  NC_002947/1309768‑1309912                                                                                                                                                                                                  GGAGGTGACCGAGAACGCCCTGGTAGGGGATATCCAGCGCACGGTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGCCAGTTCGACGTGGCTGAGGGTGACTGCCGAGCAATTGA                                             >  2:259354/1‑149    GGTGACCGAGAACGCCCTGGTAGGGGATATCCAGCGCACGGTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCG                                          >  1:242458/1‑149     GTGACCGAGAACG‑CCTGGTAGGGGATATCCAGCGCACGGTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCGT                                         >  5:85019/1‑148        ACCGAGAACGCCCTGGTAGGGGATATCCAGCGCACGGTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCGTGAC                                      <  2:242458/149‑1                              ATATCCAGCGCAGGGTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTCACTGCCGAGCAATTGACCGTGACCTGGACCTCGCCGTAGCCGTGG                <  1:259354/149‑1                                           GGTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCGTGACCTGGACCTCGCCGTAGCCGTGGCGCTGCAAGTGG    <  3:332126/148‑1                                            GTCACCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCGTGACCTGGACCTCGCAGTAGCCGTGGCGCTGCAAGTGGGC  >  3:201612/1‑149                                                                                                                                                                                                  GGAGGTGACCGAGAACGCCCTGGTAGGGGATATCCAGCGCACGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1309772‑1309726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcaCCTCCAGCTCCAGGTGGCGCGGCGCAAGGCCGGCGTGGAACAGCGCCTTTTCTACTTCGTTAGGCAGTTCGTCGTGGCTGAGGGTGACTGCCGAGCAATTGACCGTGACCTGGACCTCGCCGTAGCCGTGGCGCTGCAAGTGGGC  >  NC_002947/1309768‑1309912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.