| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1335831 | 53 (0.900) | 8 (0.150) | 7/240 | NT | 14.1% | coding (45/672 nt) | PP_1161 | lipoprotein |
| ? | NC_002947 | = 1335837 | 49 (0.910) | coding (51/672 nt) | PP_1161 | lipoprotein | |||||
AGAGATCGACCTGCAGAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1335686‑1335831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccgcgcgAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACGCCTTTTTTCTGCAGGTCGAT < NC_002947/1335837‑1335690 AGAGATCGACCTGCAGAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCGAAC > 8:99729/1‑149AGAGATCGACCTGCAGAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCAGCTGCCCGCGCGAAC > 6:19703/1‑149 CAGAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCGAACACCCGCGCGGGC < 7:99729/148‑1 AGAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCGAACACCCGCGCGGGCAG < 6:41205/149‑1 GAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCGAACACCCGCGCGGGCAGA < 2:65610/149‑1 GCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCGAACACCCGCGCGGGCA > 5:219014/1‑76 GCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCGAACACCCGCGCGGGCA < 6:219014/76‑1 CCTGAACCATCTGCCCGCGCGGGTGTTCGCGCGGGCAGCTGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACG > 5:19703/1‑149 CCTGAACCATCTGCCCGCGCGGGTGTTCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTG < 5:155817/86‑1 CCTGAACCATCTGCCCGCGCGGGTGTTCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTG > 6:155817/1‑86 TGCCCGCGCGAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCA > 5:334916/1‑126 TGCCCGCGCGAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCA < 6:334916/126‑1 GCCCGCGCAAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGGCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACGCCTTTTTTCTGC < 4:124975/149‑1 CCCGCGCGAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACGCCTTTTTTCTG > 3:167356/1‑147 CCGCGCGACCACCCGCGCGGGCAGAGGGTGCAGGGCTGCAACCAGGCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGGTGCCCAGACATGTAGACGCCTTTTGGCTGCAG > 5:100215/1‑149 GCGAACACCCGCGCGGGATGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACGCCTTTTTTCTGCAGGTgg < 6:26856/149‑3 GAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACGCCTTTTTTCTGCAGGTCGAT > 6:115588/1‑149 GAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCG > 6:262464/1‑92 GAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCG < 5:262464/92‑1 AGAGATCGACCTGCAGAAAAAAGGCGTCTACATGGCTGGGCAACTCTGCCCGCGCAAATGCCGCATCTTGCTGTGGCTGCTGATAGGCACCGACCGGCAACATGAGCTGCAGGACTGGTTGCAGCCCTGAACCATCTGCCCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1335686‑1335831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccgcgcgAACACCCGCGCGGGCAGATGGTTCAGGGCTGCAACCAGTCCTGCAGCTCATGTTGCCGGTCGGTGCCTATCAGCAGCCACAGCAAGATGCGGCATTTGCGCGGGCAGAGTTGCCCAGCCATGTAGACGCCTTTTTTCTGCAGGTCGAT < NC_002947/1335837‑1335690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |