New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1347002	52 (0.880)	3 (0.060)	3/242	NT	5.5%	intergenic (‑110/+294)	udh/galP‑I	uronate dehydrogenase/porin‑like protein
	?	NC_002947	= 1347013	56 (1.030)					intergenic (‑121/+283)	udh/galP‑I	uronate dehydrogenase/porin‑like protein

CGGCTCCGGTGAGCAGCAGGCGATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGGCGGCTTTTGCCGGCCTTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1346850‑1347002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctttcgcATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGC  <  NC_002947/1347013‑1346869                                                                                                                                                                                                                                                                                                            aggaTCCGGTGAGCAGCAGGCGATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGGCGGCTTTTGCCGGCCTT                                                                                                                                                       >  6:51466/5‑149                                                     tgGTTGATAGTGGTTGTCGGTGTCCGTATGACTTGGGTTTTTATGGGCGGTGGTTCTGTGTGTTGTCAAGGAGGCTGGGGCGGCTTTTCCCGGCCTTTCCCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAA                                                                                                              <  6:325024/136‑1                                                                              GTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGGCGGCTTTTGCCGGCCTTTCGCATTTCTTACCCGCGAAAGGCCG                                                                                                                             <  3:169808/98‑1                                                                              GTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGGCGGCTTTTGCCGGCCTTTCGCATTTCTTACCCGCGAAAGGCCG                                                                                                                             >  4:169808/1‑98                                                                                                                                                GGCCTTTCGCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTC        <  1:329437/149‑1                                                                                                                                                    TTTCGCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAGCCTACAACAACTAACAACAAGAGCCGGCCATGACAACTACCCCCTTCAATC    >  6:181215/1‑149                                                                                                                                                    TTTCGCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATC    >  4:119545/1‑149                                                                                                                                                      TCGCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGC  >  2:239801/1‑149                                                                                                                                                        GCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCAT                                                              >  1:11976/1‑87                                                                                                                                                        GCATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCAT                                                              <  2:11976/87‑1                                                                                                                                                                                                                                                                                                            CGGCTCCGGTGAGCAGCAGGCGATTGAAGGGGGTAGTGGTCATGGCCGGCTCTTGTTGTTAGTTGTTGTAGGTTGTCGTATGACTTGGGTGATTATTGGCGGTGGTTCTGTGTGTTGTCAATGAGGCTTGGGCGGCTTTTGCCGGCCTTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1346850‑1347002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctttcgcATTTCTTACCCGCGAAAGGCCGGCAAAAGCCGCCCAAGCCTCATTGACAACACACAGAACCACCGCCAATAATCACCCAAGTCATACGACAACCTACAACAACTAACAACAAGAGCCGGCCATGACCACTACCCCCTTCAATCGC  <  NC_002947/1347013‑1346869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.