New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1542752	58 (0.980)	7 (0.130)	5/248	NT	10.6%	coding (532/849 nt)	PP_1353	membrane protein
	?	NC_002947	= 1542773	63 (1.130)					coding (553/849 nt)	PP_1353	membrane protein

TATCGGTGACTGGATCGAGGCGCAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1542610‑1542752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaccaCCTTGCGCGTCGGCTGGCGGTTGGTGTTGGTAATGATGCCGTTGGACAGGCTGCCATTGGGCATGATGACCGTCTTGTTGTCACCGGTGCGCAGCACGGTGTGGAAGATCTGGATACTGTCGACGGTGCCGGCAACGCCCTGCGCCT  <  NC_002947/1542773‑1542627                                                                                                                                                                                                                                                                                                    TATCGGTGACTGGATCGAGGCGCAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGACGCATGTCAAACGGCTTCATTACCACCACCAgaacg                                                                                                                                                >  3:364118/1‑143           TGGATCGAGGCGCAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTG                                                                                                                                     >  1:289755/1‑149                        AGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTG                                                                                                                        <  2:289755/149‑1                         GGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTGG                                                                                                                       <  5:88874/149‑1                                          TCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTG                                                                                                                        <  1:45293/131‑1                                          TCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTG                                                                                                                        >  2:45293/1‑131                                                      AGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTG                                                                                                                        <  7:171589/119‑1                                                      AGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTG                                                                                                                        >  8:171589/1‑119                                                                                                                                          ACACCACCTTGCGCGTCGGCTGGCGGTTGGTGTTGGTAATGATGCCGTTGGACAGGCTGCCATTGGTCATGATGACCGTCTTGTTGTCACCGGTGCGCAGCACGGGGTGGAAGATCTGGATACTGTCGACGGTGCCGGCAACGCCCTGC      <  6:88219/149‑1                                                                                                                                              CACCTTGCGCGTCGGCTGGCGGTTGGTGTTGGTAATGATGCCGTTGGACAGGCTGCCATTGGGCATGATGACCGTCTTGTTGTCACCGGTGCGCAGCACGGTGTGGAAGATCTGGATACTGTCGACGGTGCCGGCAACGCCCTGCGCCT  >  4:144384/1‑149                                                                                                                                              CACCTTGCGCGTCGGCTGGCGGTTGGTGTTGGTAATGATGCCGTTGGACAGGCTGCCATTGGGCATGATGACCGTCTTGTTGTCACCGGTGCGCAGCACGGTGTGGAAGATCTGGATACTGTCGACGGTGCCGGCAACGCCCTGCGCCT  >  4:34325/1‑149                                                                                                                                                                                                                                                                                                    TATCGGTGACTGGATCGAGGCGCAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTGACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1542610‑1542752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaccaCCTTGCGCGTCGGCTGGCGGTTGGTGTTGGTAATGATGCCGTTGGACAGGCTGCCATTGGGCATGATGACCGTCTTGTTGTCACCGGTGCGCAGCACGGTGTGGAAGATCTGGATACTGTCGACGGTGCCGGCAACGCCCTGCGCCT  <  NC_002947/1542773‑1542627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.