| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1545615 = | 60 (1.020) | 3 (0.050) | 3/248 | NT | 5.1% | coding (488/1548 nt) | ampG | muropeptide permease AmpG |
| ? | NC_002947 | 1545650 = | 55 (0.990) | coding (453/1548 nt) | ampG | muropeptide permease AmpG | |||||
GCATCTCTCCTGGCTGATCGCCATGGCCGTACTGGTGGCCTTCGCCTCGGCTACCCAGGACATCGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1545767‑1545615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgcGAGCGCGGCCTGGCGCTGGTCATCAGCGATTTCCAGGCGGTAGGCGTCGACAGCGATGTCCTGGGTAGCCGAGGCGAAGGCCACCAGTACGGCCATGGCGATCAGCCAG > NC_002947/1545650‑1545758 GCATCTCTCCTGGCTGATCGCCATGGCCGTACTGGTGGCCTTCGCCTCGGCTACCCAGGACATCGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGG > 6:135820/1‑149 CATCTCTCCTGGCTGATCGCCATGGCCGTACTGGTGGCCTTCGCCTCGGCTACCCAGGACATCGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGC > 1:243720/1‑149 cCTCCTGGCTGATCGCCATGGCCGTACTGGTGGCCTTCGCCTCGGCTACCCAGGACATCGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGC < 6:228450/147‑1 TCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCGAGCGCGGCCTGGCGCTGGTCATCAGCGATTTCCAGGCGGTAGGCGTCGACAGCGATGTCCTGGGTAGCCGAGGCGAAGGCCACCAGTACGGCCATGGCGATCAGCCAG > 5:352692/1‑146 CGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCGAGCGCGGCCTGGCGCTGGTCATCAGCGATTTCCAGGCGGTAGGCGTCGACAGCGATGTCCTGGGTAGCCGAGGCGA < 1:61758/113‑1 CGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCGAGCGCGGCCTGGCGCTGGTCATCAGCGATTTCCAGGCGGTAGGCGTCGACAGCGATGTCCTGGGTAGCCGAGGCGA > 2:61758/1‑113 GCATCTCTCCTGGCTGATCGCCATGGCCGTACTGGTGGCCTTCGCCTCGGCTACCCAGGACATCGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1545767‑1545615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgcGAGCGCGGCCTGGCGCTGGTCATCAGCGATTTCCAGGCGGTAGGCGTCGACAGCGATGTCCTGGGTAGCCGAGGCGAAGGCCACCAGTACGGCCATGGCGATCAGCCAG > NC_002947/1545650‑1545758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |