New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731163 =	44 (0.750)	7 (0.150)	6/206	NT	15.6%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	41 (0.890)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

CGTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1731336‑1731163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATG  >  NC_002947/1731255‑1731401                                                                                                                                                                                                                                                                                                                                   CGTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTG                                                                                                                                                                              <  7:285571/149‑1  GTTCCTGTCGTCGCTGCTCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG                                                                                                                                                                             >  6:115125/1‑149  GTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG                                                                                                                                                                             <  7:118338/149‑1  GTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG                                                                                                                                                                             <  4:229963/149‑1       TGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCG                                                                                                                                                                        >  2:29111/1‑149       TGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCGTGGCACAGGCGTTCCGAGCTGTGCAGTACCTGGGGGAGCG                                                                                                                                                                        >  7:199383/1‑149         TCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGG                                                                                                                                                                       <  5:57005/148‑1                   CCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTACCACCGGCTTGGCTCAGGGGTTCAGAGAAGTGCAGTACCGGTGGGAGCGGGCGTGCCCGC                                                                                                                                                             >  1:150789/1‑148                    CAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCCCGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCGGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCG                                                                                                                                                            >  1:139795/1‑148                      AGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGCGCGTGCCCGCGAAT                                                                                                                                                         <  7:316873/149‑1                                                                       CCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGT                                                                                                                                                                   >  7:172076/1‑90                                                                       CCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGT                                                                                                                                                                   <  8:172076/90‑1                                                                              ctatctCCCATTCGCGGGCACGCCCGGTCCCACCGGCTTGGCACTGGCGTTCTGAGCTGTGCTGTACCTGTGGGAGGGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTT                                                                                                  <  4:323241/142‑1                                                                                     CCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTT                                                                                                  >  3:323241/1‑141                                                                                                       GCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAGCTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAG                                                                        >  8:147111/1‑149                                                                                                       GCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAG                                                                        >  7:149829/1‑149                                                                                                         TCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAA                                                                                                                          <  7:139935/97‑1                                                                                                         TCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAA                                                                                                                          >  8:139935/1‑97                                                                                                            CACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAGCTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACG                                                                   <  7:147111/149‑1                                                                                                                                                    cattcGCGGGCACGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCA                                                             >  2:24610/6‑115                                                                                                                                                    cattcGCGGGCACGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCA                                                             <  1:24610/110‑1                                                                                                                                                           GGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATC                    >  1:135241/1‑149                                                                                                                                                                TGCCCGCGAATGGGCTGCACAGGTCGGCCCATGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCACTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCAC               <  4:217412/149‑1                                                                                                                                                                      CGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCATCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAA         <  1:276743/149‑1                                                                                                                                                                             GCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATG  >  2:218126/1‑149                                                                                                                                                                                                                                                                                                                                   CGTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1731336‑1731163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATG  >  NC_002947/1731255‑1731401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.