| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1750785 | 50 (0.850) | 5 (0.090) | 5/252 | NT | 9.3% | coding (144/855 nt) | PP_1551 | replication protein O |
| ? | NC_002947 | = 1750809 | 49 (0.860) | coding (168/855 nt) | PP_1551 | replication protein O | |||||
ATGACAAACATCGTCCCACTTGACAAGTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1750642‑1750785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggtAGCCGGGATGCGTTGAGCGCCCGCACCGAAGTTGATGGTGGCCTTGGCCACGTACAGCACAATCTTCATCTCCCGGGCCGGGAGATCGATAGCCAGCAGGCCATCCATGAGCTGGTTGTCCATCCGGGTGAACCCCCTGGACTTGT < NC_002947/1750809‑1750664 ATGACAAACATCGTCCCACTTGACAAGTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGT < 7:211924/144‑1ATGACAAACATCGTCCCACTTGACAAGTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGT > 8:211924/1‑144 AAACATCGTCCCACTTGACAAGTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGTAGCCGGGATG > 1:21044/1‑149 GTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCG > 7:307935/1‑116 GTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCG < 8:307935/116‑1 GGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGTAGCCGGGATGCGTTGAGCGCCCGCACCGAAGTTGAT < 2:132293/149‑1 GGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGTAGCCGGGATGCGTTGAGCGCCCGCACCGAAGTTGATG < 2:21044/149‑1 CCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGTAGCCGGGATGCGTTGAGCGCCCGCACCGAAGT > 3:294760/1‑136 CCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGTAGCCGGGATGCGTTGAGCGCCCGCACCGAAGT < 4:294760/136‑1 TCGGTAGCCGGGATGCGTTGAGCGCCCGCACCGAAGTTGATGGTGGCCTTGGCCACGTACAGCACAATCTTCATCTCCCGGGCCGGGAGATCGATAGCCAGCAGGCCATCCATGAGCTGGTTGTCCATCCGGGTGAACCCCCTGGACTT < 4:19489/149‑1 GGTAGCCGGGATGCGTTGAGCGCCCGCACCGAAGTTGATGGTGGCCTTGGCCACGTACAGCACAATCTTCATCTCCCGGGCCGGGAGATCGATAGCCAGCAGGCCATCCATGAGCTGGTTGTCCATCCGGGTGAACCCCCTGGACTTGT > 5:111667/1‑149 ATGACAAACATCGTCCCACTTGACAAGTCCAGGGGGTTCACCCGGATGGACAACCAGCTCATGGATGGCCTGCTGGCTATCGATCTCCCGGCCCGGGAGATGAAGATTGTGCTGTACGTGGCCAAGGCCACCATCAACTTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1750642‑1750785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggtAGCCGGGATGCGTTGAGCGCCCGCACCGAAGTTGATGGTGGCCTTGGCCACGTACAGCACAATCTTCATCTCCCGGGCCGGGAGATCGATAGCCAGCAGGCCATCCATGAGCTGGTTGTCCATCCGGGTGAACCCCCTGGACTTGT < NC_002947/1750809‑1750664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |