New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2018585	69 (1.170)	5 (0.090)	5/252	NT	6.3%	intergenic (‑2193/‑141)	PP_1795/PP_1797	hypothetical protein/HlyD family secretion protein
	?	NC_002947	= 2018616	83 (1.470)					intergenic (‑2224/‑110)	PP_1795/PP_1797	hypothetical protein/HlyD family secretion protein

GCTGGGCGTAGCCCTGCAAAAGCTCAAGGAAACCGGCGCGACTGTGTTCATTGTCTCGCACCGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2018434‑2018585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGGCAATAAC  <  NC_002947/2018616‑2018576                                                                                                                                                                                                    GCTGGGCGTAGCCCTGCAAAAGCTCAAGGAAACCGGCGCGACTGTGTTCATTGTCTCGCACCGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTG                                              <  3:133206/149‑1    GGGCGTAGCCCTGCAAAAGCTCAAGGAAACCGGCGCGACTGTGTTCATTGTCTCGCACCGTCCCAACATCCTCACTCGGTTGCCACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCC                                            <  1:110739/149‑1     GGCGTAGCCCTGCAAAAGCTCAAGGAAACCGGCGCGACTGTGTTCATTGTCTCGCACCGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCC                                            <  1:329615/147‑1                                       CGACTGTGTTCATTGTCTCGCACCGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGGC        <  2:123391/149‑1                                                              CGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGG         >  1:278189/1‑125                                                              CGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGG         <  2:278189/125‑1                                                                                          CGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGGCAATAAC  <  5:128003/105‑1                                                                                          CGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGGCAATAAC  >  6:128003/1‑105                                                                                                                                                                                                    GCTGGGCGTAGCCCTGCAAAAGCTCAAGGAAACCGGCGCGACTGTGTTCATTGTCTCGCACCGTCCCAACATCCTCACTCGGTTG‑GACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2018434‑2018585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgCGCTGAAGCTTGGCCTGCTGGGCAGCCAGCTCGGCAATAAC  <  NC_002947/2018616‑2018576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.