New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2076009 =	44 (0.750)	4 (0.070)	3/248	NT	8.5%	coding (525/879 nt)	PP_5479	LysR family transcriptional regulator
	?	NC_002947	2076057 =	44 (0.790)					coding (573/879 nt)	PP_5479	LysR family transcriptional regulator

AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2076162‑2076009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgaAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC  >  NC_002947/2076057‑2076204                                                                                                                                                                                                                                                                                                                AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCA                                                                                                                                                           <  5:236259/149‑1  ACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAG                                                                                                                                                          >  2:152431/1‑149      GCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA                                                                                                                                                      >  1:126906/1‑149      GCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA                                                                                                                                                      >  2:155927/1‑149      GCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA                                                                                                                                                      >  6:327160/1‑149                         CCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGG                                                                                                                                                         >  3:193889/1‑127                         CCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGG                                                                                                                                                         <  4:193889/127‑1                                                                                                        ACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTC                                                           >  2:133376/1‑142                                                                                                         CTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGA                                                         >  7:161697/1‑143                                                                                                         CTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGA                                                         <  8:161697/143‑1                                                                                                         CTTCGCCTGCCACGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCATTTCAGGCGGTCGTGTTGCAGCGCAGGGTGAAGTTAGAGATCGG                                                   >  2:300279/1‑149                                                                                                                                                     AGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCG       >  3:122511/1‑149                                                                                                                                                          AAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC  >  3:56853/1‑149                                                                                                                                                          AAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC  >  6:323011/1‑149                                                                                                                                                                                                                                                                                                                AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2076162‑2076009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgaAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC  >  NC_002947/2076057‑2076204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.