| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2815455 = | 64 (1.090) | 6 (0.110) | 4/252 | NT | 8.9% | coding (1592/2382 nt) | pheT | phenylalanine‑‑tRNA ligase subunit beta |
| ? | NC_002947 | 2815485 = | 62 (1.090) | coding (1622/2382 nt) | pheT | phenylalanine‑‑tRNA ligase subunit beta | |||||
AGTTGGCCGACAAAACGCAGGCCGCTTTCGAACAGGCGCACGCGGTCTTGCTGGCGGTTCAGGTTGTGCTGCAGAGCCTTGACCAGGCCCGGCCACAGCGAGGCGCGCATGGCGGCCATGTCGCTGGAGATGGGGTTGGCCAGCAGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2815605‑2815455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCGGCCTGCGTTTTGTCGGCCAACTGGGTGATCTGCAGCAGCAGCCAA > NC_002947/2815485‑2815628 AGTTGGCCGACAAAACGCAGGCCGCTTTCGAACAGGCGCACGCGGTCTTGCTGGCGGTTCAGGTTGTGCTGCAGAGCCTTGACCAGGCCCGGCCACAGCGAGGCGCGCATGGCGGCCATGTCGCTGGAGATGGGGTTGGCCAGCAGCAG > 8:23070/1‑149AGTTGGCCGACAAAACGCAGGCCGCTTTCGAACAGGCGCACGCGGTCTTGCTGGAGGTTCAGGTTGTGCTGCAGAGCCTTGACCAGGCCCGGCCACAGCGAGGCGCGCATGGCGGCCATGTCGCTGGAGATGGGGTTGGCCAGCAGCAG > 5:2459/1‑149 CCATGTCGCTGGAGATGGGGTTGGCTAGCAGCAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCG > 5:192255/1‑121 CCATGTCGCTGGAGATGGGGTTGGCTAGCAGCAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCG < 6:192255/121‑1 CATGTCGCTGGAGATGGGGTTGGCCAGCAGCAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCG < 7:237167/134‑1 CATGTCGCTGGAGATGGGGTTGGCCAGCAGCAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCG < 7:241507/134‑1 CATGTCGCTGGAGATGGGGTTGGCCAGCAGCAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCG > 8:237167/1‑134 CATGTCGCTGGAGATGGGGTTGGCCAGCAGCAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCG > 8:241507/1‑134 CAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCGGCCTGCGTTTTGTCGGCCAACTGGGTGATCTGCAGCAGCAGCCAA < 3:283890/149‑1 CAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCGGCCTGCGTTTTGTC < 7:49890/118‑1 CAGCGACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCGGCCTGCGTTTTGTC > 8:49890/1‑118 AGTTGGCCGACAAAACGCAGGCCGCTTTCGAACAGGCGCACGCGGTCTTGCTGGCGGTTCAGGTTGTGCTGCAGAGCCTTGACCAGGCCCGGCCACAGCGAGGCGCGCATGGCGGCCATGTCGCTGGAGATGGGGTTGGCCAGCAGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2815605‑2815455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgACATGGCCGCCATGCGCGCCTCGCTGTGGCCGGGCCTGGTCAAGGCTCTGCAGCACAACCTGAACCGCCAGCAAGACCGCGTGCGCCTGTTCGAAAGCGGCCTGCGTTTTGTCGGCCAACTGGGTGATCTGCAGCAGCAGCCAA > NC_002947/2815485‑2815628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |