| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3501146 | 64 (1.090) | 4 (0.070) | 4/248 | NT | 6.0% | intergenic (‑365/‑121) | PP_5566/PP_5567 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3501187 | 65 (1.170) | intergenic (‑406/‑80) | PP_5566/PP_5567 | hypothetical protein/hypothetical protein | |||||
CAGGGCGGTATTGCCCCGTTTTCCTAGGCCTGTAGTGAGTTGACAGGGCAGCTTTTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTTCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3500994‑3501146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctgcaTGCGCGCATAACGCACGTGCTTGCGGAAACATGCGACTGCCTGCAGAAAGGAAAGTGCCATCATGCATTGAAATAAATGCGACAGGGTTCACATTCCAGAATGCCAGCCAGGCAGAAAGGCCCAAAGGAAACACCGGCAAAA < NC_002947/3501187‑3501046 CAGGGCGGTATTGCCCCGTTTTCCTAGGCCTGTAGTGAGTTGACAGGGCAGCTTTTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTT < 1:283082/148‑1CAGGGCGGTATTGCCCCGTTTTCCTAGGCCTGTAGTGAGTTGACAGGGCAGCTTTTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTT < 6:163729/148‑1 TTGACAGGGCAGCTTTTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTTCTGCATGCGCGCATAACGCACGTGCTTGCGGAAACATGC > 4:232324/1‑148 TTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTTCTGCATGCGCGCATAACGCACGTGCTTGCGGAAACATGCGACTGCCTGCAGAAA < 3:232324/148‑1 TTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTTCTGCATGCGCGCATAACGCACGTGCTTGCGGAAACATGCGACTGCCTGCAGAA < 1:287048/147‑1 CGGTGGTTCGTTTGTGCCGTTCTCCCTGGCTGGCATTCTGGAATGTGAACACTGTCGCAATTATTTCAATGCATGATGGCACTTTCCTTTCTGCATCCGCGCATAACTCACTTGCTTGCGGAAACATGCGACTGACTGCAGAAAGGAAA < 6:286612/149‑1 TTCTGCATGCGCGCATAACGCACGTGCTTGCGGAAACATGCGACTGCCTGCAGAAAGGAAAGTGCCATCATGCATTGAAATAAATGCGACAGGGTTCACATTCCAGAATGCCAGCCAGGCAGAAAGGCCCAAAGGAAACACCGGCAAAA < 5:166832/149‑1 CAGGGCGGTATTGCCCCGTTTTCCTAGGCCTGTAGTGAGTTGACAGGGCAGCTTTTGCCGGTGTTTCCTTTGGGCCTTTCTGCCTGGCTGGCATTCTGGAATGTGAACCCTGTCGCATTTATTTCAATGCATGATGGCACTTTCCTTTCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3500994‑3501146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctgcaTGCGCGCATAACGCACGTGCTTGCGGAAACATGCGACTGCCTGCAGAAAGGAAAGTGCCATCATGCATTGAAATAAATGCGACAGGGTTCACATTCCAGAATGCCAGCCAGGCAGAAAGGCCCAAAGGAAACACCGGCAAAA < NC_002947/3501187‑3501046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |