New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522334	52 (0.880)	3 (0.050)	3/248	NT	5.6%	intergenic (+121/‑576)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522383	52 (0.930)					intergenic (+170/‑527)	PP_5584/PP_3113	hypothetical protein/transposase

GGTGGAGCGGGTGTCGAGCTTGCACCTGAGCAGCTTGGCGACCACTGTGAGTGAAGTGCAGCGGGCCTTGGCACCATGAGTGCTTCTGCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3522185‑3522334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggggCGGCGCCCGGTCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGCCCCCCTGCCGAGCGCCAAGAGTGGCCATGTCTGGAGCAGCCTCGTGCTGTTAAAAGGCCCGTGCAGAAGCACTCATGGTGCCAAGGCCCGCTGCACTTCA  <  NC_002947/3522383‑3522236                                                                                                                                                                                                                                                                                                            GGTGGAGCGGGTGTCGAGCTTGCACCTGAGCAGCTTGGCGACCACTGTGAGTGAAGTGCAGCGGGCCTTGGCACCATGAGTGCTTCTGCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGG                                                                                                                                                       >  2:167491/1‑149  GTGGAGCGGGTGTCGAGCTTGCACCTGAGCAGCTTGGCGACCACTGTGAGTGAAGTGCAGCGGGCCTTGGCACCATGAGTGCTTCTGCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGGG                                                                                                                                                      >  8:67119/1‑149                                                   GTGAAGTGCAGCGGGCCTTGGCACCATGAGTGCTTCTGCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGGGCGGCGCCCGGTCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGC                                                                                                      >  1:159656/1‑148                                                   GTGAAGTGCAGCGGGCCTTGGCACCATGAGTGCTTCTGCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGGGCGGCGCCCGGGCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGC                                                                                                      <  2:159656/148‑1                                                             GCGGGCCTTGGCACCATGAGTGCTTCTTCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGGGCGGCGCCCGGTCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGCCCCCCTGCCGA                                                                                           <  5:176618/149‑1                                                                                                                                                      GCGGCGCCCGGTCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGCCCCCCTGCCGAGCGCCAAGAGTGGCCATGTCTGGAGCAGCCTCGTGCTGTTAAAAGGCCCGTGCAGAAGCACTCATGGTGCCAAGGCCCGCTGCACTTCA  <  7:326290/149‑1                                                                                                                                                      GCGGCGCCCGGTCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGCCCCCCTGCCGAGCGCCAAGAGTGGCCATGTCTGGAGCAGCCTCGTGCTGTTAAAAGGCCCGTGCAGAAGCACTCATGGTGCCAAGGCCCGCTGCACTTCA  <  7:331187/149‑1                                                                                                                                                                                                                                                                                                            GGTGGAGCGGGTGTCGAGCTTGCACCTGAGCAGCTTGGCGACCACTGTGAGTGAAGTGCAGCGGGCCTTGGCACCATGAGTGCTTCTGCACGGGCCTTTTAACAGCACGAGGCTGCTCCAGACATGGCCACTCTTGGCGCTCGGCAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3522185‑3522334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggggCGGCGCCCGGTCTCGACACAAACACGAACTCCAGGTCGTACCTCTCGCCCCCCTGCCGAGCGCCAAGAGTGGCCATGTCTGGAGCAGCCTCGTGCTGTTAAAAGGCCCGTGCAGAAGCACTCATGGTGCCAAGGCCCGCTGCACTTCA  <  NC_002947/3522383‑3522236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.