New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3545337 =	63 (1.070)	4 (0.070)	4/254	NT	5.9%	coding (98/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	3545385 =	66 (1.160)					coding (50/2607 nt)	PP_3130	hypothetical protein

GCTGCACAACAGCCCGGCCGTGGAACTGGCAGAACCCGACCTACAACCCAGGTAATGTTCATGAATAGGCTGTCCCTGCGTCATTACGTGCGCCTTTCGGCCATTGCCGGCCTGGCCCTGCTGCCGCTGGCCAGCTGGGCTTCAGACTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3545488‑3545337 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTTGTGCAGCCGGCGAACCATCTGGATGTAGGCCACGCCCAGGCCTGCGA  >  NC_002947/3545385‑3545528                                                                                                                                                                                                                                                                                                          GCTGCACAACAGCCCGGCCGTGGAACTGGCAGAACCCGACCTACAACCCAGGTAATGTTCATGAATAGGCTGTCCCTGCGTCATTACGTGCGCCTTTCGGCCATTGCCGGCCTGGCCCTGCTGCCGCTGGCCAGCTGGGCTTCAGACTG                                                                                                                                                     >  6:189714/1‑149                                                                                                    GCCATTGCCGGCCTGGCCCTGCTGCCGCTGGCCAGCTGGGCTTCAGACTGGCAATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGT                                                  >  3:232473/1‑149                                                                                                     CCATTGCCGGCCTGGCCCTGCTGCCGCTGGCCAGCTGGGCTTCAGACTGGCAATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTT                                                 >  2:220139/1‑149                                                                                                      CATTGCCGGCCTGGCCCTGCTGCCGCTGGCCAGCTGGGCTTCAGACTGGCAATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTTG                                                >  1:186050/1‑149                                                                                                          GCCGGGCTTGCACTGCTGCCGCTGGCGAGCTGGGCTTCAGTCTGGAAATGGCCGAAAGGCGCACGTAATGACTCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGTTTCTGCCTGTTCCACGGCCGGGCTGTTGTGC                                             <  2:186050/148‑1                                                                                                                                                 GACTGGCAATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTTGTGCAGCCGGCGAACCATCTGGATGTAGGCCACGCCCAGGCCTG     <  4:232473/149‑1                                                                                                                                                     GGCAATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTTGTGCAGCCGGCGAACCATCTGGATGTAGGCCACGCCCAGGCCTGCGA  >  1:283172/1‑148                                                                                                                                                       CAATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTTGTGCAGCCGGCGAACCATCTGGATGTAGGCCACGCCCAGGCCTGCGA  >  5:212157/1‑146                                                                                                                                                                                                                                                                                                          GCTGCACAACAGCCCGGCCGTGGAACTGGCAGAACCCGACCTACAACCCAGGTAATGTTCATGAATAGGCTGTCCCTGCGTCATTACGTGCGCCTTTCGGCCATTGCCGGCCTGGCCCTGCTGCCGCTGGCCAGCTGGGCTTCAGACTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3545488‑3545337 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaATGGCCGAAAGGCGCACGTAATGACGCAGGGACAGCCTATTCATGAACATTACCTGGGTTGTAGGTCGGGTTCTGCCAGTTCCACGGCCGGGCTGTTGTGCAGCCGGCGAACCATCTGGATGTAGGCCACGCCCAGGCCTGCGA  >  NC_002947/3545385‑3545528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.