New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3817433	46 (0.780)	4 (0.070)	4/246	NT	7.6%	coding (416/2364 nt)	bamA‑II	outer membrane protein assembly factor
	?	NC_002947	= 3817501	54 (0.980)					coding (484/2364 nt)	bamA‑II	outer membrane protein assembly factor

TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3817280‑3817433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccaCACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTCGGCCGAGTAGCGGCCTTGGGCCACGTACTGGCGCTGCAGCTCGTTACGCACACCTTCGAGGGTGGCACGCTGGAAGATCTCGCCTTCGGCCAGGCCCGATTGCTT  <  NC_002947/3817501‑3817357                                                                                                                                                                                                                                                                                                             TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAG                                                                                                                                                        <  1:100482/149‑1     GCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCC                                                                                                                                                    <  2:351727/149‑1      CGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCA                                                                                                                                                   <  8:259972/149‑1                          CGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTAAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCACACGGTTGCGCGGCTGCGG                                                                                                                                >  1:90783/1‑148                                              CGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCACACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTC                                                                                                           <  2:90783/149‑1                                                           AGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCACACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTCGGCCGAGTAGCGG                                                                                              >  8:23123/1‑149                                                                                      GGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCACACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTCGGCCGAGTAGCGGCCTTGGGCCACGTACTGGCGCTGCAG                                                                    <  7:23123/148‑1                                                                                                                                                      CGCCACACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTCGGCCGAGTAGCGGCCTTGGGCCACGTACTGGCGCTGCAGCTCGTTACGCACACCTTCGAGGGTGGCACGCTGGAAGATCTCGCCTTCGGCCAGGCCCGATTGCT   >  7:124848/1‑149                                                                                                                                                       GCCACACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTCGGCCGAGTAGCGGCCTTGGGCCACGTACTGGCGCTGCAGCTCGTTACGCACACCTTCGAGGGTGGCACGCTGGAAGATCTCGCCTTCGGCCAGGCCCGATTGCTT  >  1:69825/1‑149                                                                                                                                                                                                                                                                                                             TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3817280‑3817433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccaCACGGTTGCGCGGCTGCGGCACCACCTCGGCGTCGACCTCGGCCGAGTAGCGGCCTTGGGCCACGTACTGGCGCTGCAGCTCGTTACGCACACCTTCGAGGGTGGCACGCTGGAAGATCTCGCCTTCGGCCAGGCCCGATTGCTT  <  NC_002947/3817501‑3817357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.