New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3971413	NA (NA)	4 (0.070)	3/250	NT	NA	coding (1332/1536 nt)	PP_3501	transposase
	?	NC_002947	= 3971468	NA (NA)					coding (1387/1536 nt)	PP_3501	transposase

TGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3971261‑3971413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTG  <  NC_002947/3971468‑3971323                                                                                                                                                                                                                                                                                                             TGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGCTACG                                                                                                                                                        >  6:196057/1‑149   GATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGC                                                                                                                                                      >  1:45561/1‑149     TGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGATGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCC                                                                                                                                                    >  7:175955/1‑149                                   GATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACA                                                                                                                      >  5:49080/1‑149                                    ataagaCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACAG                                                                                                                     >  6:178512/7‑149                                                                       AACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATC                                                                                   <  6:49080/148‑1                                                                        ACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTG                                                                                 <  5:178512/149‑1                                                                                                                                                    CGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGG     >  3:344041/1‑149                                                                                                                                                    CGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGG     >  8:327536/1‑149                                                                                                                                                    CGGCCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGG     >  8:4691/1‑149                                                                                                                                                      GCCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCT   >  2:1127/1‑149                                                                                                                                                       CCCGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTG  <  7:58312/149‑1                                                                                                                                                                                                                                                                                                             TGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3971261‑3971413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccGTTTACCACTGCGTAGCGACCCGGCAAACAGCCAGTTCGAGCGCCCGAGTGCCCAGGGCCGTATCTGGTTCTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCGTCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTG  <  NC_002947/3971468‑3971323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.