| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4013887 = | 51 (0.870) | 7 (0.130) | 6/244 | NT | 13.5% | coding (229/519 nt) | PP_3541 | MgtC family transporter |
| ? | NC_002947 | 4013931 = | 42 (0.770) | coding (185/519 nt) | PP_3541 | MgtC family transporter | |||||
CTTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4014043‑4013887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATCGG > NC_002947/4013931‑4014078 CTTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑A < 8:79365/149‑1 TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑AT > 3:207470/1‑149 TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACACACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑AT > 5:309366/1‑149 GCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAG > 2:63908/1‑149 TTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGG > 4:279293/1‑148 TGCCATGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAG > 5:100183/1‑148 CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAG > 3:283226/1‑149 TGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGTAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCG > 6:278443/1‑149 TGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACA‑GGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCG > 6:171034/1‑148 GTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCG > 3:247400/1‑148 TGGCACCGAGCATGGCGGGGGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAG > 6:264924/1‑148 CATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGTAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACC < 5:278443/149‑1 GAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTG > 4:238723/1‑148 AACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGA > 5:159056/1‑148 ACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACA > 1:6363/1‑149 ACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAA < 5:35810/73‑1 ACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAA > 6:35810/1‑73 CAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGAATTGCGACACCTCGCGCTCATCGGTGACAT > 1:75918/1‑149 GGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATCGG > 7:27257/1‑149 CTTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4014043‑4013887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATCGG > NC_002947/4013931‑4014078 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |