New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4189262 =	50 (0.850)	4 (0.070)	4/246	NT	7.6%	coding (525/819 nt)	PP_5611	transcriptional regulator
	?	NC_002947	4189286 =	50 (0.900)					coding (549/819 nt)	PP_5611	transcriptional regulator

CATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4189415‑4189262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgaCCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTCGT  >  NC_002947/4189286‑4189433                                                                                                                                                                                                                                                                                                                 CATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGG                                                                                                                                                           >  4:213251/1‑149   TCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCAGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGTTCGGGCCGCAGATGCTCGGCC                                                                                                                                                         >  5:120382/1‑149     TCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGCCC                                                                                                                                                        >  7:155858/1‑148      CACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGCCCG                                                                                                                                                       >  5:46754/1‑148       ACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAACCCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGC                                                                                                                                                          <  1:106159/145‑1                                           TCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGAGCATCTGCGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGG                                                                                                                 <  4:123426/149‑1                                                      CGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGCCC                                                                                                                                                        >  7:258595/1‑99                                                      CGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGCCC                                                                                                                                                        <  8:258595/99‑1                                                                                                                                   GTCGGGCCGCAGATGCTCGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGT                          <  3:123426/149‑1                                                                                                                                   GTCGGGCCGCAGATGCTCGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCC                                                                                           <  5:102455/84‑1                                                                                                                                   GTCGGGCCGCAGATGCTCGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCC                                                                                           >  6:102455/1‑84                                                                                                                                                    CGGCCCGTCCTTGATCGGAGCTGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTAGCGCAGCACAAGGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGT          <  3:289950/148‑1                                                                                                                                                    CGGCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGTTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGA             <  8:107127/145‑1                                                                                                                                                      GCCCGACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTC       <  2:129819/149‑1                                                                                                                                                           ACCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTCGT  <  8:67984/149‑1                                                                                                                                                                                                                                                                                                                 CATCTCACCGTCAACCATGCCATAGTCGTCCTCGATCAATCGTCGTTGTGCTGCGGTAAGCTCAGGGTGAGGGATAAAGACCACGCTAA‑CCATCCGCTCCCAAGCTTTGTCCAAACCGCTCCGATCAAGGTCGGGCCGCAGATGCTCGGCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4189415‑4189262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccgaCCTTGATCGGAGCGGTTTGGACAAAGCTTGGGAGCGGATGGTTAGCGTGGTCTTTATCCCTCACCCTGAGCTTACCGCAGCACAACGACGATTGATCGAGGACGACTATGGCATGGTTGACGGTGAGATGCAGTTGAAGTGTCGTCGT  >  NC_002947/4189286‑4189433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.