New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 431768445 (0.760)3 (0.050) 3/244 NT 6.0% coding (217/273 nt) PP_5628 hypothetical protein
?NC_002947 = 4317713 52 (0.950)coding (246/273 nt) PP_5628 hypothetical protein

TCTGCCCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4317530‑4317684
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcgcCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGATGCCGAACTCATTCTGAAGATGTGTAATCAATACAATTATCCCCATCGAGTTGATTCCCTGC  <  NC_002947/4317713‑4317569
                                                                                                                                                                                                                                                                                                            
TCTGCCCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGG                                                                                                                                                         >  2:158595/1‑149
    CCCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCC                                                                                                                                                       <  2:191615/147‑1
    CCCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGC                                                                                                                                                        <  4:174596/146‑1
    CCCGCCCCTTTGGACCAAGAAGCCACGCTTCACGCGAAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGGCAATCTTCACGCTCTCACTCTG                                                                                                                                                          <  8:112722/144‑1
     CCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCG                                                                                                                                                    >  5:158904/1‑149
     CCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTAGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCG                                                                                                                                                    >  2:326394/1‑149
                                            GAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCA                                                                                                             <  3:260635/149‑1
                                                 AACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGTCTGGAGCGAGGCCAGTGT                                                                                                         >  7:126343/1‑148
                                                                ATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGTCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTG                                                                                         <  8:126343/149‑1
                                                                                                                                                  TGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGATGCCGAACTCATTCTGAAGATGTGTAATCAATACA                             >  5:61889/1‑127
                                                                                                                                                  TGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGATGCCGAACTCATTCTGAAGATGTGTAATCAATACA                             <  6:61889/127‑1
                                                                                                                                                     CCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGATGCCGAACTCATTCTGAAGATGTGTAATCAATACAATTATCCCCATCGAGTTGATTCCCT    >  1:197971/1‑149
                                                                                                                                                     CCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGATGCCGAACTCATTCTGAAGATGTGTAATCAATACAATTATCCCCATCGAGTTGATTCCCT    >  2:177683/1‑149
                                                                                                                                                       TCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGAAGCCGAACTCATTCTGAAGATGTGTAATCAATACAATTATCCCCATCTAGTTGATTCCCTGC  >  6:40315/1‑149
                                                                                                                                                                                                                                                                                                            
TCTGCCCGCCCCTTTGGACCCAGAAGCCACGCTTCACGCGCAGGGAATCAACTCGATGGGGATAATTGTATTGATTACACATCTTCAGAATGAGTTCGGCATCGTCTTCGACCCGGCCAACTTTGCCAATCTTCACGCACTCACACTGGCCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4317530‑4317684
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcgcCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAGTGTGAGTGCGTGAAGATTGGCAAAGTTGGCCGGGTCGAAGACGATGCCGAACTCATTCTGAAGATGTGTAATCAATACAATTATCCCCATCGAGTTGATTCCCTGC  <  NC_002947/4317713‑4317569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.