New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4390879 =	58 (0.980)	5 (0.090)	5/252	NT	8.3%	coding (46/192 nt) coding (288/297 nt)	PP_5640 PP_3866	hypothetical protein hypothetical protein
	?	NC_002947	4390934 =	55 (0.970)					coding (233/297 nt)	PP_3866	hypothetical protein

TGAACAACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4390937‑4390879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCGGCCACGTCCATGTCGAGCGATACGGCCTCGTCCTTGTCCATCTTGTACGGCAGGGCCTTGATGTTC  >  NC_002947/4390934‑4391071                                                                                                                                                                                                       TGAACAACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCGGCCACGTCCATGTCGAGC                                                  >  8:41846/1‑149  GAACAACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCGGCCACGTCCATGTCGAGC                                                  >  7:190538/1‑148     CAACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCG                                                                    <  2:301631/127‑1     CAACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGCGATGGCGGCGCAGACCGCGATGTATTTAGCG                                                                    >  1:301631/1‑127       ACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCGGCCACGTCCATGTCGAGCGATACG                                            <  7:41846/149‑1                                                  AGCGACGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCGGCCACGTCCATGTCGAGCGATACGGCCTCGTCCTTGTCCATCTTGTACGGCAGGGCCTTGATGTTC  <  8:190538/148‑1                                                                                                                                                                                                       TGAACAACGCCGCGTGGACGGTCGCCGGTTTTTTCTTGGCGCCGGCATCAGCGACGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4390937‑4390879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgTTCAGGTCCGCCAGGTCCAGCTGGTTGACCGACGAGGTCGGGATGGCGGCGCAGACCGCGATGTATTTAGCGGCCACGTCCATGTCGAGCGATACGGCCTCGTCCTTGTCCATCTTGTACGGCAGGGCCTTGATGTTC  >  NC_002947/4390934‑4391071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.