New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4660236 = | 62 (1.050) | 4 (0.070) | 4/250 | NT | 6.2% | coding (594/1362 nt) | nuoF | NADH‑quinone oxidoreductase subunit F |
? | NC_002947 | 4660277 = | 61 (1.090) | coding (635/1362 nt) | nuoF | NADH‑quinone oxidoreductase subunit F |
GCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4660385‑4660236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttccCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGG > NC_002947/4660277‑4660423 GCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTC < 3:242491/149‑1 CAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTC > 2:48144/1‑147 CAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCG < 2:300260/148‑1 CAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAACCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCG > 1:300260/1‑148 GAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGC > 6:331405/1‑149 GCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAG < 5:331405/149‑1 CCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGG < 1:114358/124‑1 CCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGG > 2:114358/1‑124 TTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGAT > 8:100943/1‑149 CCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATG < 3:30059/148‑1 CCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATG < 6:376716/148‑1 CCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGTCACCAAGCTGATtg < 6:169700/148‑3 GCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4660385‑4660236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttccCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGG > NC_002947/4660277‑4660423 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |