New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4683186	64 (1.090)	4 (0.080)	3/218	NT	6.7%	intergenic (+45/‑176)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein
	?	NC_002947	= 4683234	58 (1.180)					intergenic (+93/‑128)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein

GCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4683017‑4683186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgcTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGC  <  NC_002947/4683234‑4683097                                                                                                                                                                                                                                                                                                                      GCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAG                                                                                                                                                                 >  5:351016/1‑149  CGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGC                                                                                                                                                                <  7:121322/149‑1   GATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCC                                                                                                                                                               >  2:341608/1‑149     TTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCA                                                                                                                                                             >  1:112497/1‑149        TCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTC                                                                                                                                                          >  1:250830/1‑149        TCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTC                                                                                                                                                          >  2:289219/1‑149        TCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGCCTGCTTTGCAGCCCATTC                                                                                                                                                          >  3:333877/1‑149         CTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCG                                                                                                                                                         >  8:109531/1‑149            TACCTGGTTGGCAATCGCTTCAATTTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGGCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCG                                                                                                                                                       <  4:271143/148‑1            TACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGG                                                                                                                                                      >  8:316955/1‑149            TACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGG                                                                                                                                                      <  2:250830/149‑1              CCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCTGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC                                                                                                                                                    <  5:35225/149‑1              CCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC                                                                                                                                                    <  2:325779/149‑1              CCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC                                                                                                                                                    <  2:140232/149‑1                                     TGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC                                                                                                                                            <  2:335049/134‑1                                     TGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC                                                                                                                                            >  1:335049/1‑134                                                                          CGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGG                                                                                        <  7:109531/149‑1                                                                                 GCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGG                                                                                        >  7:85018/1‑142                                                                                 GCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGG                                                                                        <  8:85018/142‑1                                                                                 GCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGGCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCC                                                                                 <  8:350884/149‑1                                                                                                                                                       CCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAATAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGGAGACGGTCAGGGTCTGGCCTGG           >  1:341608/1‑149                                                                                                                                                               GGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGG   <  7:170088/149‑1                                                                                                                                                               GGGCACGCACGCTCCCACAGGTACGACACAGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAACAAGCCCCTGTAACGACTCAACGCACGAGGAAGACGGTCAGGGACTGGCCAGGCTTGAGGG   >  2:43353/1‑149                                                                                                                                                                GGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGC  <  5:94599/149‑1                                                                                                                                                                       CCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGA      >  7:241978/1‑138                                                                                                                                                                       CCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGA      <  8:241978/138‑1                                                                                                                                                                                                                                                                                                                      GCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4683017‑4683186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgcTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGC  <  NC_002947/4683234‑4683097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.