New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4700744 =	55 (0.930)	4 (0.080)	4/234	NT	7.5%	intergenic (‑57/+93)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
	?	NC_002947	4700816 =	50 (0.950)					intergenic (‑129/+21)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C

TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700904‑4700744 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACC  >  NC_002947/4700816‑4700954                                                                                                                                                                                                                                                                                                              TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAA                                                                                                                                                         >  8:310602/1‑149  CGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                        >  3:185609/1‑149    GCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCC                                                                                                                                                      >  4:346225/1‑149     CCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCG                                                                                                                                                     <  6:355408/149‑1        GCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                  <  1:18485/149‑1                           GCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACC                                                                                                                                                       <  7:74767/125‑1                           GCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACC                                                                                                                                                       >  8:74767/1‑125                                                                                                           CCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTCCAGGCTTCCTGCCAGCGCTTCGATTACCTGTCCATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGGCGATCAct                                               >  2:127754/1‑147                                                                                                           CCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAAT                                               >  7:89446/1‑149                                                                                                             GCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGG                                                                                      >  1:108771/1‑108                                                                                                             GCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGG                                                                                      <  2:108771/108‑1                                                                                                                                                       CCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGC                  <  7:156739/134‑1                                                                                                                                                       CCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGC                  >  8:156739/1‑134                                                                                                                                                        CGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACC  <  6:185609/149‑1                                                                                                                                                                                                                                                                                                              TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700904‑4700744 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACC  >  NC_002947/4700816‑4700954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.