New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4889595	33 (0.560)	3 (0.060)	3/208	NT	8.2%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889632	41 (0.880)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

GCGAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4889421‑4889595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggctcgcccgcgaaGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCG  <  NC_002947/4889632‑4889487                                                                                                                                                                                                                                                                                                                                    GCGAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGAC                                                                                                                                                                               <  6:264897/149‑1    AGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCT                                                                                                                                                                            >  1:20420/1‑149        CAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCAGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGG                                                                                                                                                                        >  7:96988/1‑149            TACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGC                                                                                                                                                                    >  7:104418/1‑149            TACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGCGACCCTGTGGGAG                                                                                                                                                                     >  2:350915/1‑148              CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGG                                                                                                                                                                  >  5:289180/1‑149              CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGG                                                                                                                                                                  >  3:175405/1‑149               CGCTTCCTGTTCAAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGG                                                                                                                                                                 >  8:221800/1‑149                 CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACC                                                                                                                                                                              >  8:71486/1‑134                 CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACC                                                                                                                                                                              <  7:71486/134‑1                  TTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTAGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTC                                                                                                                                                              >  1:293745/1‑149                     CTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCC                                                                                                                                                           >  4:275441/1‑149                      TGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCC                                                                                                                                                          >  8:93133/1‑149                      TGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCC                                                                                                                                                          >  5:99420/1‑149                      TGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGACGCTGACCACCACCGAAGCGGGACTGGGCTGGCTGAAAAAACACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCtgcc                                                                                                                                                          >  5:301292/1‑145                           GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGA                                                                                                                                                      <  7:93133/148‑1                           GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCG                                                                                                                                                       >  8:47554/1‑147                                                                 CGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGT                                                                                                              >  4:207721/1‑149                                                                       GTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGG                                                                                                        <  7:47554/149‑1                                                                                     CCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCC                                                                                          <  3:207721/149‑1                                                                                                                                                     CCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGG                          >  8:104418/1‑149                                                                                                                                                      CCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGT                         >  7:221800/1‑149                                                                                                                                                          gGGGAGCGGGCGCGCCCGCTAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCGGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGTGTTGTTCCTCAGATAGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTG                     <  2:265188/148‑1                                                                                                                                                             GAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCGTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGT                   >  1:266655/1‑149                                                                                                                                                               GCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAG                >  4:175405/1‑149                                                                                                                                                                CGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGC               >  7:300053/1‑149                                                                                                                                                                  GGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGG             >  2:33392/1‑149                                                                                                                                                                     TCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTT          >  6:289180/1‑149                                                                                                                                                                       GCCCGCGAAGCAGACAACTCGGTGGATGGCACGGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTT          <  2:103976/147‑1                                                                                                                                                                       GCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTG         <  1:104131/148‑1                                                                                                                                                                       GCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTT          <  2:266655/147‑1                                                                                                                                                                        CCCGCTAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGGGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTTGTCAGCGGCTTGTA       <  3:112141/149‑1                                                                                                                                                                        CCCGCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTA       <  1:23582/149‑1                                                                                                                                                                         cccccAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACACGGTCCCGAGTTGTTACTCAGATTGCGTAGTGGGTATTCCGCCAGCCCCCGCCAGCTTCGGTGGTGGTCAGCGCCTTGTt       >  4:282747/6‑147                                                                                                                                                                           GCGAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTC    >  3:275441/1‑149                                                                                                                                                                             GAAGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCACTTCGGTGGTGGTCAGCGGCTTGTACTCCG  >  2:39229/1‑149                                                                                                                                                                                                                                                                                                                                    GCGAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4889421‑4889595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggctcgcccgcgaaGCAGACAACTCGGTGGATGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCG  <  NC_002947/4889632‑4889487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.