New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4938681 =	67 (1.140)	5 (0.090)	4/246	NT	7.8%	coding (72/1059 nt)	ddlA	D‑alanine‑‑D‑alanine ligase A
	?	NC_002947	4938719 =	55 (0.990)					coding (34/1059 nt)	ddlA	D‑alanine‑‑D‑alanine ligase A

TCCTGAATATCGGCAAATGCCGTTGTTATTTTTATTGGATATTGGATACAGTAGCCAAAATCTCCTGACTGAGGCCTGTCGAAATGAAACAAAATGTGATCGCACTGGTTTTTGGGGGGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4938835‑4938681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccgccCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATATTCAGGAATGGAAGAGCATGCCTTTGCAAATCACT  >  NC_002947/4938719‑4938863                                                                                                                                                                                                                                                                                                              TCCTGAATATCGGCAAATGCCGTTGTTATTTTTATTGGATATTGGATACAGTAGCCAAAATCTACTGACTGAGGCCTGTCGAAATGAAACAAAATGTGATCGCACTGGTTTTTGGGGGGCGGAGCTCAGAGCATTCAGTGGCGCTACG                                                                                                                                                          >  7:236573/1‑148      AATATCGGCAAATGCCGTTGTTATTTTTATTGGATATTGGATACAGTAGCCAAAATCTCCTGACTGAGGCCTGTCGAAATGAAACAAAATGTGATCGCACTGGTTTTTGGGGGGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCC                                                                                                                                                      <  8:52666/147‑1                                                                                                                    GGGGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGA                                       >  4:51678/1‑148                                                                                                                      GGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATAT                                    >  6:232094/1‑149                                                                                                                      GGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATA                                     <  3:82422/148‑1                                                                                                                      GGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATA                                     >  4:82422/1‑148                                                                                                                                          GTGGCGCTACGCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATATTCAGGAATGGAAGAGCATGC                <  3:51678/149‑1                                                                                                                                                    GCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGATATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATATTCAGGAATGGAAGAGCATGCCTTTGCAAAT      <  3:367457/149‑1                                                                                                                                                    GCTCCGCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATATTCAGGAATGGAAGAGCATGCCTTTGCAAAT      <  1:341067/149‑1                                                                                                                                                         GCCCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCATGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATATTCAGGAATGGAAGAGCATGCCTTTGCAAATCACT  >  2:24160/1‑148                                                                                                                                                                                                                                                                                                              TCCTGAATATCGGCAAATGCCGTTGTTATTTTTATTGGATATTGGATACAGTAGCCAAAATCTCCTGACTGAGGCCTGTCGAAATGAAACAAAATGTGATCGCACTGGTTTTTGGGGGGCGGAGCTCAGAGCATTCAGTGGCGCTACGCTCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4938835‑4938681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccgccCCCCAAAAACCAGTGCGATCACATTTTGTTTCATTTCGACAGGCCTCAGTCAGGAGATTTTGGCTACTGTATCCAATATCCAATAAAAATAACAACGGCATTTGCCGATATTCAGGAATGGAAGAGCATGCCTTTGCAAATCACT  >  NC_002947/4938719‑4938863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.