| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4961403 | 58 (0.980) | 4 (0.070) | 4/252 | NT | 6.2% | coding (1035/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | = 4961489 | 65 (1.150) | coding (949/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC | |||||
CCCAGGCCGCCGGCATCAGCAACCACCTCGAGAGATGGCTCGGTGCCAGCCGACAATGGAATGGCGCCTGCCAGACAAAAATCCGCCGCCTCGATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4961254‑4961403‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcCATGTGGCCAAGATGAAGCATGCCTCGGTGCGCCTCTCGCCAGCGGCTCGGGCCTGCCTGCAGGCATATGCCTGGCCGGGCAACGTGCGCGAACTGGACAACGCCCTGCAGCGGGCGTTGATTCTGCAGCAGGGTGGCGTGATCG < NC_002947/4961489‑4961345 CCCAGGCCGCCGGCATCAGCAACCACCTCGAGAGATGGCTCGGTGCCAGCCGACAATGGAATGGCGCCTGCCAGACAAAAATCCGCCGCCTCGATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCG > 1:87402/1‑149CCCAGGCCGCCGGCATCAGCAACCACCTCGAGAGATGGCTCGGTGCCAGCCGACAATGGAATGGCGCCTGCCAGACAAAAATCCGCCGCCTCGATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCG > 3:197512/1‑149 GAGATGGCTCGGTGCCAGCCGACAATGGAATGGCGCCTGCCAGACAAAAATCCGCCGCCTCGATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCGCCATGTGGCCAAGATGAAGCATGCCTCGGTG > 2:169758/1‑149 GATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCGCCATGTGGCCAAGATGAAGCATGCCTCGGTGCGCCTCTCGCCAGCGGCTCGGGCCTGCCTGCAGGCATATGCCTGGCCGGGCAACGTGCG < 3:215774/147‑1 GATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCGCCATGTGGCCAAGATGAAGCATGCCTCGGTGCGCCTCTCGCCAGCGGCTCGGGCCTGCCTGCAGGCATATGCCTGGCCGGGCAACGTGCG > 4:215774/1‑147 CGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCGCCATGTGGCCAAGATGAAGCATGCCTCGGTGCGCCTCTCGCCAGCGGCTCGGGCCTGCCTGCAGGCATATGCCTGGCCGGGCAACGTGCGCGAACTG < 1:169758/149‑1 GCGCCATGTGGCCAAGATGAAGCATGCCTCGGTGCGCCTCTCGCCAGCGGCTCGGGCCTGCCTGCAGGCATATGCCTGGCCGGGCAACGTGCGCGAACTGGACAACGCCCTGCAGCGGGCGTTGATTCTGCAGCAGGGTGGCGTGATCG < 5:218330/149‑1 CCCAGGCCGCCGGCATCAGCAACCACCTCGAGAGATGGCTCGGTGCCAGCCGACAATGGAATGGCGCCTGCCAGACAAAAATCCGCCGCCTCGATCACGCCACCCTGCTGCAGAATCAACGCCCGCTGCAGGGCGTTGTCCAGTTCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4961254‑4961403‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcCATGTGGCCAAGATGAAGCATGCCTCGGTGCGCCTCTCGCCAGCGGCTCGGGCCTGCCTGCAGGCATATGCCTGGCCGGGCAACGTGCGCGAACTGGACAACGCCCTGCAGCGGGCGTTGATTCTGCAGCAGGGTGGCGTGATCG < NC_002947/4961489‑4961345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |