New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5474952	51 (0.870)	3 (0.050)	3/244	NT	5.4%	intergenic (‑158/‑148)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
	?	NC_002947	= 5475004	58 (1.060)					intergenic (‑210/‑96)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase

GGTTCGGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5474796‑5474952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccctttCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCGC  <  NC_002947/5475004‑5474858                                                                                                                                                                                                                                                                                                                  GGTTCGGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGC                                                                                                                                                             >  6:168431/1‑149          TCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTC                                                                                                                                                    >  7:326510/1‑149                                                                  GCGGGTGGCGGATTGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGG                                                                                            <  8:326510/149‑1                                                                           GGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGC                                                                                                  >  1:107504/1‑134                                                                           GGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGC                                                                                                  <  2:107504/134‑1                                                                                                                                                       GCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCC       >  8:317206/1‑149                                                                                                                                                           TTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCG   >  1:61371/1‑149                                                                                                                                                            TTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCGC  >  4:201309/1‑149                                                                                                                                                                                                                                                                                                                  GGTTCGGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5474796‑5474952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccctttCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCGC  <  NC_002947/5475004‑5474858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.