| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5597242 | 73 (1.240) | 5 (0.090) | 5/246 | NT | 7.1% | coding (743/1434 nt) | PP_4923 | outer membrane efflux protein |
| ? | NC_002947 | = 5597279 | 63 (1.140) | coding (780/1434 nt) | PP_4923 | outer membrane efflux protein | |||||
GCCAACCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5597088‑5597242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaccgcGTAGTTGGTGGCCAGCAGGTTGAGGTTCTGGCGCCCGGCGGTTTCGAC < NC_002947/5597279‑5597232 GCCAACCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCG > 4:174753/1‑148GCCAACCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCG > 8:202504/1‑148 AACCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAAC > 4:9288/1‑149 ACCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACC > 2:100737/1‑149 CCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCG > 4:52581/1‑149 CCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGCGTAGTTGGTG > 8:143251/1‑149 GTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGCGTAGTTGGTGGCCAGCAGGTTGAGGTTCTGGCGCCCGGCGGTTTC < 7:143251/149‑1 GTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGCGTAGTTGGTGGCCAGCAGGTTGAGGTTCTGGCGCCCGGCGGTTT < 3:9288/148‑1 CCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGCGTAGTTGGTGGCCAGCAGGTTGAGGTTCTGGCGCCCGGCGGTTTCGAC < 7:142208/147‑1 CCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGCGTAGTTGGTGGCCAGCAGGTTGAGGTTCTGGCGCCCGGCGGTTTCGAC > 8:142208/1‑147 GCCAACCGGATCATCGCCGAACGCCAGGTGCAGGATGCCTTCGAGGCCCTGGTGACCCTGACCAACCGTGAGTACACCTCTATCCAGGGCGTGGTACATAGCCTGCCGGTACAAGTGCCAACGCCCAACGATGCCAAAGCCTGGGTCGAAACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5597088‑5597242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaccgcGTAGTTGGTGGCCAGCAGGTTGAGGTTCTGGCGCCCGGCGGTTTCGAC < NC_002947/5597279‑5597232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |