New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5798241	67 (1.140)	8 (0.140)	6/260	NT	10.7%	intergenic (‑342/+32)	gltB/PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
	?	NC_002947	= 5798265	67 (1.150)					intergenic (‑366/+8)	gltB/PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein

CGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5798093‑5798241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTAGCTTTCGACTAGCCTGCTGCGCCCGAGCGCGGCAGGCTTTTCTGTCCCGGACTGCCGGCCACAAGCCCTTAGTTGCAGTCATGGCTGAAACGCTTCAGACTCGAG  <  NC_002947/5798265‑5798119                                                                                                                                                                                                                                                                                                          CGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTAC                                                                                                                                                     <  1:352082/149‑1                            TCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACCGGGCGGCCTCACCCCGCCGCCCCGTc                                                                                                                          >  6:100918/1‑148                                GTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGGATCACCCCGCCGCCCAGTA                                                                                                                          <  5:162170/145‑1                                GTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGGCCGGGACAGAATAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTGAGCTACTGGGCGGCATCACCCCGCCGCCCAGga                                                                                                                          >  6:162170/1‑143                                                                            GGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTA                                                                                                           <  3:23212/116‑1                                                                            GGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTA                                                                                                           <  3:28066/116‑1                                                                            GGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTA                                                                                                           >  4:23212/1‑116                                                                            GGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACCGGGCGGCATCACCCCGCCGCCCAGTAGCGAAGCGAATTCTA                                                                                                           >  4:28066/1‑116                                                                                                                         TAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGTAGCTAAGCGAATTCTAGCTTTCGACTAGCCTGCTGCGCCCGAGCGCGGCAGGCTTTTCTGTCCCGGCCTGCCGGCCACAAGCCCGTAGTTGCAG                             >  5:100918/1‑149                                                                                                                                                     CCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTAGCTTTCGACTAGCCTGCTGCGCCCGAGCGCGGCAGGCTTTTCTGTCCCGGACTGCCGGCCACAAGCCCTTAGTTGCAGTCATGGCTGAAACGCTTCAGACTCGAG  <  2:189008/148‑1                                                                                                                                                     CCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTAGCTTTCGACTAGCCTGCTGCGCCCGAGCGCGGCAGGCTTTTCTGTCCCGGACTGCCGGCCACAAGCCCTTAGTTGCAGTCATGGCTGAAACGCTTCAGACTCGA   <  2:248374/147‑1                                                                                                                                                     CCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTAGCTTTCGACTAGCCTGCTGCGCCCGAGCGCGGCAGGCTTTTCTGTCCCGGACTGCCGGCCACAAGCCCTTAGTTGCAGTCATGGCTGAAACGCTTCAGACTCGA   <  2:94637/147‑1                                                                                                                                                                                                                                                                                                          CGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5798093‑5798241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGGCGGCATCACCCCGCCGCCCAGTAGCTAAGCGAATTCTAGCTTTCGACTAGCCTGCTGCGCCCGAGCGCGGCAGGCTTTTCTGTCCCGGACTGCCGGCCACAAGCCCTTAGTTGCAGTCATGGCTGAAACGCTTCAGACTCGAG  <  NC_002947/5798265‑5798119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.