New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5874259 =	60 (1.020)	6 (0.110)	5/252	NT	9.7%	coding (250/426 nt)	PP_5148	membrane protein
	?	NC_002947	5874297 =	54 (0.950)					coding (212/426 nt)	PP_5148	membrane protein

GCCGTCAGGGCGATGCCGAAGCCTACGCCAAGCTGCTGCGCCGGCCGTTGGTGTTCGTCTGGTTGGTGATGGGCCTGTGCCTGGTGAGCATGCCGTTCACCGGCTGGTGGCTGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5874411‑5874259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGG  >  NC_002947/5874297‑5874444                                                                                                                                                                                                                                                                                                               GCCGTCAGGGCGATGCCGAAGCCTACGCCAAGCTGCTGCGCCGGCCGTTGGTGTTCGTCTGGTTGGTGATGGGCCTGTGCCTGGTGAGCATGCCGTTCACCGGCTGGTGGCTGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGG                                                                                                                                                          <  5:246034/149‑1   CGTCAGGGCGATGCCGAAGCCTACGCCAAGCTGCTGCGCCGGCCGTTGGTGTTCGTCTGGTTGGTGATGGGCCTGTGCCTGGTGAGCATGCCGTTCACCGGCTGGTGGCTGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGT                                                                                                                                                        >  3:101475/1‑149    GTCAGGGCGATGCCGAAGCCTACGCCAAGCTGCTGCGCCGGCCGTTGGTGTTCGTCTGGTTGGTGATGGGCCTGTGCCTGGTGAGCATGCCGTTCACCGGCTGGTGGCTGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTG                                                                                                                                                       >  5:148670/1‑149                                                                                                                TGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGTACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGC                                                                              >  7:236235/1‑114                                                                                                                TGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGTACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGC                                                                              <  8:236235/114‑1                                                                                                                  GTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGTACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCT                                         >  5:137848/1‑149                                                                                                                  GTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGTACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTA                                                          <  1:254356/132‑1                                                                                                                  GTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGTACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTA                                                          >  2:254356/1‑132                                                                                                                           GTGGGCTGGCCACTGGGGCAGACCTGGGTGTACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACCGCGA                                 <  6:137848/148‑1                                                                                                                                                         TACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGG  >  2:6866/1‑149                                                                                                                                                                                                                                                                                                               GCCGTCAGGGCGATGCCGAAGCCTACGCCAAGCTGCTGCGCCGGCCGTTGGTGTTCGTCTGGTTGGTGATGGGCCTGTGCCTGGTGAGCATGCCGTTCACCGGCTGGTGGCTGGTACACCTGGTGGGCTGGCCACTGGGGCAGACCTGGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5874411‑5874259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtACCAGCCACCAGCCGGTGAACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGG  >  NC_002947/5874297‑5874444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.