New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5992771 =	70 (1.190)	4 (0.070)	4/248	NT	6.2%	coding (762/1263 nt)	opdB	proline‑specific outer membrane porin D
	?	NC_002947	5992841 =	54 (0.970)					coding (832/1263 nt)	opdB	proline‑specific outer membrane porin D

ACTTGATCGCGTTGGCCAGGTAGATGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGCCACGCTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5992925‑5992771 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGCGATCAAGTACGCCGACTTCAACGGCCCTGGCGAGCACTCGTGGCAACTGCGCTATGACCT  >  NC_002947/5992841‑5992977                                                                                                                                                                                                                                                                                                      ACTTGATCGCGTTGGCCAGGTAGATGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGACACGCTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCG                                                                                                                                                 >  7:241368/1‑149   TTGATCGCGTTGGCCAGGTAGATGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGCCACGCTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGC                                                                                                                                               >  3:154129/1‑149       TCGCGTTGGCCAGGTAGTTGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGCCACGCTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTG                                                                                                                                           <  3:246071/149‑1       TCGCGTTGGCCAGGTAGATGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGCCACGCTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTG                                                                                                                                           >  2:213197/1‑149       TCGCGTTGGCCAGGTAGATGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGCCACGCTCAGCGCCTGGGCGCCGAAGCGGTACTTGGCCCGCCGGCGGTACGCGCGGGTGGCGATCGCCCCGGCGCTt                                                                                                                                           >  8:253310/1‑148                                                                                    CTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTGAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGC                                                              >  2:217451/1‑149                                                                                     TCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTGAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGC                                                              >  3:90564/1‑148                                                                                                    CGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTGAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGCGATCAAGTACGCCGAC                                              <  4:90564/149‑1                                                                                                                              TAAGCGAGGGTGTCGATCGCCCCGGCGCTGAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGCGATCAAGTACGCCGACTTCAACGGCCCTGGCGAGCACTCGT                     <  1:217451/148‑1                                                                                                                                                        GCTGAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGCGATCAAGTACGCCGACTTCAACGGCCCTGGCGAGCACTCGTGGCAACTGCGCTATGACCT  >  5:284724/1‑141                                                                                                                                                        GCTGAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGCGATCAAGTACGCCGACTTCAACGGCCCTGGCGAGCACTCGTGGCAACTGCGCTATGACCT  <  6:284724/141‑1                                                                                                                                                                                                                                                                                                      ACTTGATCGCGTTGGCCAGGTAGATGGAGTCGCCGCCGACGAAGTCGAACGGGGTGTCGCCCTCGACCTTCTGGTAGGCCACGCTCAGCGCCTGGGCGCCGAAGCTGTACTTGGCCAGCAGGCTGTAAGCGAGGGTGTCGATCGCCCCGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5992925‑5992771 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgAGCGTGGCCTACCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTGGCCAACGCGATCAAGTACGCCGACTTCAACGGCCCTGGCGAGCACTCGTGGCAACTGCGCTATGACCT  >  NC_002947/5992841‑5992977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.