New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6087558 =	67 (1.140)	4 (0.070)	4/252	NT	6.0%	intergenic (+9/‑221)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	6087652 =	61 (1.080)					intergenic (+103/‑127)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase

CGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6087709‑6087558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGAT  >  NC_002947/6087652‑6087799                                                                                                                                                                                                                                                                                                              CGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                                                                                         <  4:264549/149‑1   GCCAAACGGGGATTGATATGGCCAAGGTCTTTGGCCGGTTGGGTGGTCACCTATCCGGCCTTTTCGCGGGTCAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                       <  4:283091/149‑1   GCCAAAAGGGGATTGATCTGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGGGACCCCGCTCCTACAATGCCCACCAGGGCGTCAGGGGTGGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                       <  5:214520/149‑1    CCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                       >  5:51989/1‑148    CCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGG                                                                                                                                                        >  3:55847/1‑147    CCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGG                                                                                                                                                        <  4:55847/147‑1     CAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                       >  3:20112/1‑147           GGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                      >  8:189215/1‑142           GGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                      <  7:189215/142‑1                                                                                 CTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCC                                                                            >  3:159478/1‑146                                                                                 CTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCC                                                                            <  4:159478/146‑1                                                                                  TCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGC                                                                        >  1:350617/1‑149                                                                                                                                         TACCCGCGAAGAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCT                  <  2:350617/148‑1                                                                                                                                                    AGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTC      <  4:255140/149‑1                                                                                                                                                    AGGCCGGATAGGTCACCACCCATCCGGACAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTAGCGTCGTTCTCCCCTGCTGATAAGCACATGACAATGGACCCACGCCAGTCCACCCGGAGAACAACAAAGCTGACGATCTATTC      >  7:195369/1‑149                                                                                                                                                        CGGATAGGTCACCACCCATCCGGCCAAAGCCCTTGGCCATATCAATCCCCTTTTGGACGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACACACGCCAGTCCCAACGGGTAACAACACTGAAGCCGATCTAGTCCGAg  >  8:319099/1‑148                                                                                                                                                        CGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGAT  <  1:178852/149‑1                                                                                                                                                                                                                                                                                                              CGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6087709‑6087558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGAT  >  NC_002947/6087652‑6087799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.