| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6141453 | 58 (0.980) | 3 (0.050) | 3/244 | NT | 5.2% | coding (1189/3159 nt) | cusA | CzcA family RND family copper transporter |
| ? | NC_002947 | = 6141475 | 55 (1.000) | coding (1211/3159 nt) | cusA | CzcA family RND family copper transporter | |||||
GTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6141320‑6141453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcatcgACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAGG < NC_002947/6141475‑6141328 GTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGG > 3:324757/1‑129GTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGG < 4:324757/129‑1 TGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCGATGGCGATGCCGC < 6:133339/149‑1 GTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCGATGGCGATGCCG > 1:312470/1‑116 GTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCGATGGCGATGCCG < 2:312470/116‑1 GCGGCATCGACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCA < 4:171717/149‑1 CGGCATCGACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCG < 3:21913/90‑1 CGGCATCGACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCG > 4:21913/1‑90 GGCATCGACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGGGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACA < 5:39293/149‑1 GCATCGACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAAT < 3:307674/111‑1 GCATCGACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAAT > 4:307674/1‑111 GACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGCCACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAGG > 6:142626/1‑149 GTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6141320‑6141453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcatcgACCATTGCGCCAATGGCGATGGCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAGG < NC_002947/6141475‑6141328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |