New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6171212	56 (0.950)	4 (0.070)	4/248	NT	6.9%	coding (1090/1836 nt)	glmS	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
	?	NC_002947	= 6171225	55 (0.990)					coding (1077/1836 nt)	glmS	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase

AGCGAAACCAGCTGAGTGGTGAACGCTTTGGTCGAAGCCACGCCGATTTCAGGGCCGGCCAAGGTCAGCAGGGTCAAGTCCGACTCGCGTACCAGCGAGCTGATACCCACGTTGCAGATCGCCAGGCTGCCAAGGAAACCCAACTCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6171061‑6171212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTGCTGACCTTGGCCGGCCCTGAAATCGGCGTGGCTTCGACCAAAGCGT  <  NC_002947/6171225‑6171083                                                                                                                                                                                                                                                                                                         AGCGAAACCAGCTGAGTGGTGAACGCTTTGGTCGAAGCCACGCCGATTTCAGGGCCGGCCAAGGTCAGCAGGGTCAAGTCCGACTCGCGTACCAGCGAGCTGATACCCACGTTGCAGATCGCCAGGCTGCCAAGGAAACCCAACTCCT                                                                                                                                                     <  3:80621/148‑1  GCGAAACCAGCTGAGTGGTGAACGCTTTGGTCGAAGCCACGCCGATTTCAGGGCCGGCCAAGGTCAGCAGGGTCAAGTCCGACTCGCGTACCAGCGAGCTGATACCCACGTTGCAGATCGCCAGGCTGCCAAGGAAACCCAACTCCTTG                                                                                                                                                   >  1:327915/1‑149                         GCTTTGGTCGAAGCCACGCCGATTTCAGGGCCGGCCAAGGTCAGCAGTGTCAAGTCCGACTCGCGTACCAGCGAGCTGATACCCACGTTGCAGATCGCCAGGCTGCCAAGGAAACCCAACTCCTTGGCCGCACTGCGCAACGCCAAGGA                                                                                                                            <  6:315895/149‑1                                      CCACGCCGATTTCAGGGCCGGCCAAGGTCAGCAGGGTCAAGTCCGACTCGCGTACCAGCGAGCTGATACCCACGTTGCAGATCGCCAGGCTGCCAAGGAAACCCAACTCCTTGGCCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTT                                                                                                               <  4:127154/149‑1                                                                                                                         GCCAGGCTGCCAAGGAAACCCAACTCCTTGGCGTTGCGCAGTGCGGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGCCTTGCCCCTGCTGACCTTGGCCGGCCagat                            >  7:286061/1‑145                                                                                                                         GCCAGGCTGCCAAGGAAACCCAACTCCTTGGCGTTGCGCAGTGCGGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTGCTGACCTTGGCCGGC                                 <  8:286061/144‑1                                                                                                                                                   CTTGGCCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTGCTGACCTTGGCCGGCCCTGAAAGCGGCGTGGCTTCGACCAAAGCGT  >  5:213493/1‑149                                                                                                                                                    TTGGCCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTGCTGACCTTGGCCGGCCCTGAAATCGGCGTGGCTTCGACCAAAGCGT  >  2:327915/1‑148                                                                                                                                                    TTGGCCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTG                                                >  1:264787/1‑102                                                                                                                                                    TTGGCCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTG                                                <  2:264787/102‑1                                                                                                                                                    TTGGCCGCACTGCGCAACGCCAAGGAGGTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACACTGCTGACCTTGGCCGGCCCTGAAATCGGAGTGCGTACGACCAACGCGT  >  6:259971/1‑148                                                                                                                                                                                                                                                                                                         AGCGAAACCAGCTGAGTGGTGAACGCTTTGGTCGAAGCCACGCCGATTTCAGGGCCGGCCAAGGTCAGCAGGGTCAAGTCCGACTCGCGTACCAGCGAGCTGATACCCACGTTGCAGATCGCCAGGCTGCCAAGGAAACCCAACTCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6171061‑6171212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcCGCACTGCGCAACGCCAAGGAGTTGGGTTTCCTTGGCAGCCTGGCGATCTGCAACGTGGGTATCAGCTCGCTGGTACGCGAGTCGGACTTGACCCTGCTGACCTTGGCCGGCCCTGAAATCGGCGTGGCTTCGACCAAAGCGT  <  NC_002947/6171225‑6171083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.