New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	69470 =	45 (0.760)	3 (0.050)	3/248	NT	6.0%	coding (377/528 nt)	gmhB	D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase
	?	NC_002947	69519 =	52 (0.930)					coding (328/528 nt)	gmhB	D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase

ATTAGTTCTCTGGCGATAGCTGCCAGATCGTCGAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTCACCGCCCTGCTCG  >  NC_002947/69323‑69616                                                                                                                                                    |                                                                                                                                                   cgctggcaacccttgaggccatgcatgcgcgcctgcgcgcgctggtggccgagcagggcggtgaggtgggccatatcgtgtattgcccgcatgggccggacgaagggtgcgattgccgcaagcccaagcccggcatgttgcgggcgaTc                                                                                                                                                   >  6:304834‑M1/148‑149 (MQ=255)  ttAGTTCTCAGGCGATAGCTGCCAGATCGTCGAAAATCAGTGTAGTTACCGGGACGCCATTTTACAGCGTACGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCAACGACGGGCAGGGCGGCCTCCAGCACACCTAAGCTCTCg                                                                                                                                                  >  4:242072/1‑149 (MQ=255)      gcaacccttgaggccatgcatgcgcgcctgcgcgcgctggtggccgagcagggcggtgaggtgggccatatcgtgtattgcccgcatgggccggacgaagggtgcgattgccgcaagcccaagcccggcatgttgcgggcgaTCGCcga                                                                                                                                              >  6:362638‑M1/143‑149 (MQ=255)         tctGGCGATAGCTGCCAGATCGTCGAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCcgacg                                                                                                                                            >  3:27496/1‑148 (MQ=255)           tGGCGATAGCTGCCAGATCGTCGAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCcgacga                                                                                                                                           <  4:352342/147‑1 (MQ=255)             gCGATAGCTGCCAGATCGTCGAAACTCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCa                                                                                                                                       <  5:355686/149‑1 (MQ=255)             gCGATAGCTGCCAGATCGTCGAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCa                                                                                                                                       <  7:326590/149‑1 (MQ=255)                          gATCGTCGAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAgg                                                                                                                          <  6:83728/149‑1 (MQ=255)                            tcgtcgAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGc                                                                                                                         <  7:224685/148‑1 (MQ=255)                               tcgAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCcgac                                                                                                                                             >  6:278837/1‑125 (MQ=255)                               tcgAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCcgac                                                                                                                                             <  5:278837/125‑1 (MQ=255)                                  aaaaTCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTg                                                                                                                  <  3:330983/149‑1 (MQ=255)                                      tCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTaa                                                                                                              >  4:12765/1‑149 (MQ=255)                                              gTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGc                                                                                                      <  8:170919/149‑1 (MQ=255)                                                    agcagggcggtgaggtgggccatatcgtgtattgcccgcatgggccggacgaagggtgcgattgccgcaagcccaagcccggcatgttgcgggcgaTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGc                                                                                                >  8:316992‑M1/97‑149 (MQ=255)                                                           cTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCaa                                                                                          >  3:16004/1‑148 (MQ=255)                                                           cTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAAc                                                                                         <  2:156426/149‑1 (MQ=255)                                                            tttttCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCcaca                                                                                        >  8:206556/1‑149 (MQ=255)                                                            tttttCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACa                                                                                        >  8:84212/1‑149 (MQ=255)                                                                   aGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCggg                                                                                 >  7:219558/1‑149 (MQ=255)                                                                          gCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCgggcttgggc                                                                          <  6:327658/149‑1 (MQ=255)                                                                              gCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGc                                                                      >  8:116184/1‑149 (MQ=255)                                                                                    gCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCaa                                                                 <  4:27496/148‑1 (MQ=255)                                                                                     ccGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAAt                                                                <  7:84212/148‑1 (MQ=255)                                                                                     ccGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATc                                                               <  3:12765/149‑1 (MQ=255)                                                                                     ccGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATc                                                               <  2:65945/149‑1 (MQ=255)                                                                                       ggTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAAt                                                                <  7:90171/146‑1 (MQ=255)                                                                                       ggTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAAt                                                                >  8:90171/1‑146 (MQ=255)                                                                                           ttCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCAccc                                                         >  3:50151/1‑149 (MQ=255)                                                                                             cACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCgggcttgg                                                                            <  7:36214/128‑1 (MQ=255)                                                                                             cACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCgggcttgg                                                                            >  8:36214/1‑128 (MQ=255)                                                                                             cACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCg                                                                                   <  2:212711/121‑1 (MQ=255)                                                                                             cACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCg                                                                                   >  1:212711/1‑121 (MQ=255)                                                                                              aCCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAGCCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTc                                                      <  3:242072/149‑1 (MQ=255)                                                                                               ccAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGc                                                                                                      >  2:370264/1‑100 (MQ=255)                                                                                               ccAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGc                                                                                                      <  1:370264/100‑1 (MQ=255)                                                                                                  gCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTcc                                                  >  4:110771/1‑149 (MQ=255)                                                                                                         ttGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCAt                                           >  5:209210/1‑149 (MQ=255)                                                                                                              cACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGc                                                                                                           >  4:129830/1‑80 (MQ=255)                                                                                                              cACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGc                                                                                                           <  3:129830/80‑1 (MQ=255)                                                                                                                attgccgcaagcccaagcccggcatgttgcgggcgaTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGa                                                                                                    <  2:288349‑M1/49‑1 (MQ=255)                                                                                                                attgccgcaagcccaagcccggcatgttgcgggcgaTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGa                                                                                                    >  1:288349‑M1/37‑85 (MQ=255)                                                                                                                          gggCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGata                          <  4:16004/149‑1 (MQ=255)                                                                                                                                 cTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCa                   <  3:357301/149‑1 (MQ=255)                                                                                                                                  tCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCAc                  >  1:169258/1‑149 (MQ=255)                                                                                                                                         cACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTCACCg           >  1:200631/1‑149 (MQ=255)                                                                                                                                          aCCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATa                                 <  7:238675/126‑1 (MQ=255)                                                                                                                                          aCCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATa                                 >  8:238675/1‑126 (MQ=255)                                                                                                                                          aCCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTc               <  6:159832/144‑1 (MQ=255)                                                                                                                                          aCCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTc               >  5:159832/1‑144 (MQ=255)                                                                                                                                            cTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTCACCGccc        <  6:209210/149‑1 (MQ=255)                                                                                                                                                  tGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTCACCGCCCTGCTCg  >  2:79037/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ATTAGTTCTCTGGCGATAGCTGCCAGATCGTCGAAAATCAGTGTAGTTTCCGGGACGCCTTTTTCCAGGGTCCGCTCGCCCTTGCCGGTCTTCACCAGCACGGGTTGTGCACCGACGGCCAGGGCGGCCTCCAGGTCACCTTTGCTGTCGCCGACGAACCAGACGCCTTCAAGGCCGATCTGGTAATGCTCGGCGATCGCCCGCAACATGCCGGGCTTGGGCTTGCGGCAATCGCACCCTTCGTCCGGCCCATGCGGGCAATACACGATATGGCCCACCTCACCGCCCTGCTCG  >  NC_002947/69323‑69616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.