| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2099960 = | 25 (0.420) | 5 (0.100) | 5/216 | NT | 17.7% | intergenic (‑71/‑134) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | 2100055 = | 26 (0.540) | intergenic (‑166/‑39) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
CTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGC‑GCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCG > NC_002947/2099812‑2100091 | cttgTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTgg > 6:365122/1‑149 (MQ=255) gTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGgc < 4:236817/147‑1 (MQ=255) tGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGccc < 1:273133/148‑1 (MQ=255) tGACAGGCGATTGGTGAACTTGATATCCAAGCGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATACCCGAATAGCCCCGGCTGCTGGAGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGccc > 3:16834/1‑148 (MQ=255) gccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcg < 3:135847‑M1/11‑1 (MQ=255) gccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcg < 7:277714‑M1/11‑1 (MQ=255) ggCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCcgc > 3:91607/1‑149 (MQ=255) gCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCcgcg > 7:9561/1‑149 (MQ=255) cccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCcgcg > 5:242926‑M1/137‑149 (MQ=255) cccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgGCGCCCCTCCGCgg < 3:164595‑M1/14‑1 (MQ=255) gATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCggg > 3:235963/1‑149 (MQ=255) ggTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑tt < 6:179035/148‑1 (MQ=255) tgcaaCTTCAAATCCTTGAGCCCCCCGCCGGTTCCCCGTCCCTTGCGCTGCGCAAGAATAGCCCAATCGCCCCGGCTGCTGGGGGGTCTGTCTGTTCATTTCAGTTTTTCGCAATGGGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGc < 8:233987/146‑1 (MQ=255) tGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTTcc > 2:106281/1‑149 (MQ=255) gatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgGCGCCCCTCCGCGGGC‑TTGcc > 4:164595‑M1/129‑149 (MQ=255) aCTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGt < 4:91607/149‑1 (MQ=255) tCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTACCACAg > 3:97650/1‑149 (MQ=255) tCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑ATTGCCGTTACcaa > 3:84869/1‑146 (MQ=255) tCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCt > 5:308698/1‑149 (MQ=255) gcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgcttgGCGCCCCTCCGCGGGC‑TTGCCCGTTCCcac > 6:136678‑M1/110‑139 (MQ=255) gcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgcttgGCGCCCCTCCGCGGGC‑TTGCCCGTTCCcac < 5:136678‑M1/30‑1 (MQ=255) cccGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTg < 5:94186/127‑1 (MQ=255) cccGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTg > 6:94186/1‑127 (MQ=255) gAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGc < 6:308698/149‑1 (MQ=255) gAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGc < 4:235963/149‑1 (MQ=255) ccGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGaa < 1:330434/149‑1 (MQ=255) ttCCTTGCGCTGCTCAAGCATCGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCATTTTATCGCCAAGCGGGGGCAGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTCGCCCCAGGCTGAACGc < 7:237711/149‑1 (MQ=255) gccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTg > 8:20858‑M1/90‑108 (MQ=255) ctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgt < 4:225326/149‑1 (MQ=255) cgattcggcgcggtccataaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg > 2:334780‑M1/82‑149 (MQ=255) gcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGcc < 4:150617‑M1/63‑1 (MQ=255) gcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGcc > 3:150617‑M1/75‑137 (MQ=255) ccccGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCGGTGGGAGCGGGCAAGCCCGCGGAg < 7:9621/149‑1 (MQ=255) tgtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCGTGGCCCGTGCCC‑CCGGGACCGGGTAGCCCCCGGCGGGCCGCCCGCCCGGGGGGGGGGGGCCCGCCCGCGGCGGGGGGCGGCCCCGGccccc > 4:40160/1‑149 (MQ=255) tgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAg > 4:30359/1‑98 (MQ=255) tgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAg < 3:30359/98‑1 (MQ=255) aTTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGC‑GCAGCGGCCCCCAAAAAACt > 5:379647/1‑147 (MQ=255) cAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTTCCCCTTACCACACGTAAAGCATATCCCCACGCAGAACCCAACCCCAGTGGGAGCGGGCAAGCCCGCGGACGGGCGC‑GCAGCGGCCCCCCAAAAACAGAGAATTTTATGattac > 6:347402/1‑145 (MQ=255) | CTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGC‑GCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCG > NC_002947/2099812‑2100091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |