New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2256171 = | 42 (0.710) | 3 (0.050) | 3/246 | NT | 7.3% | intergenic (+231/‑473) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
? | NC_002947 | 2256263 = | 37 (0.670) | intergenic (+323/‑381) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
GCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTT > NC_002947/2256024‑2256318 | accgagtaggtattcattcacgcaggtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccgg > 4:42553‑M1/148‑149 (MQ=255) ccTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAggg > 8:88653/1‑149 (MQ=255) ccTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAggg < 3:365781/149‑1 (MQ=255) cgagtaggtattcattcacgcaggtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccGGGc > 8:270606‑M1/146‑149 (MQ=255) cTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGATCTGACAGAGCCGTTGCCGTTGCCGTTTCTTTTGGTTTTGATTCTAAGTGCGCGGTAGTTCAGGCGAAGCAGATTGAGACTTCAGGAGGCAGAGCGCAGGGc > 3:32170/1‑149 (MQ=38) aTCGCCAGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCGTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCtt < 6:326687/148‑1 (MQ=255) taggtattcattcacgcaggtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggccccagcgcgaagctcccgggtgcccacgctcccggcgtgg < 5:63332‑M1/8‑5 (MQ=255) tCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGc > 6:224023/1‑149 (MQ=255) tCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGc < 3:353232/149‑1 (MQ=255) ccGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCgga < 8:170339/149‑1 (MQ=255) aTAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggaggga < 7:75504/149‑1 (MQ=255) tAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggagggag < 6:315024/149‑1 (MQ=255) aTTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGt < 7:88653/149‑1 (MQ=255) aTTCATGCCGCTGTTTAAGGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGt < 5:49174/149‑1 (MQ=255) tCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGa > 1:141230/1‑149 (MQ=255) aTGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACg < 1:198352/149‑1 (MQ=255) aTGCCGCGTGTTAATGCCGAAATGTCTGCTCTTACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTTCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCATGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACg < 6:258241/149‑1 (MQ=18) ccGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGGTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGc < 5:240386/149‑1 (MQ=255) gtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccgg > 7:235913‑M1/123‑124 (MQ=255) gtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccgg < 8:235913‑M1/2‑1 (MQ=255) gCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCAt < 2:8549/149‑1 (MQ=255) cTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATg < 8:213395/149‑1 (MQ=255) tttAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGAt > 5:68736/1‑149 (MQ=255) cGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCATTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCTGAGGGAGGTGACTGTCATCCATGCCCGTCa < 4:32170/149‑1 (MQ=18) cGAAATCTCTGCTCTGCCAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGTCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATCCATGCCCGTCa < 6:364554/149‑1 (MQ=17) ttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAgcgc < 7:229227‑M1/44‑1 (MQ=255) tCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCt < 3:327035/148‑1 (MQ=255) agagCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGccc > 6:227505/1‑143 (MQ=255) agagCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGccc < 5:227505/143‑1 (MQ=255) cgttgccgttgccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGc < 5:224023/149‑1 (MQ=255) ttgccgttgccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCt < 2:119797/149‑1 (MQ=255) tgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAgc > 8:229227‑M1/80‑148 (MQ=255) gccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAgcgc < 4:331403/148‑1 (MQ=38) gccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGcgcg > 5:111736/1‑149 (MQ=38) ccgttgcTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCgg < 2:141230/149‑1 (MQ=37) ccgttgcTTTTGCTTTAGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATGGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCgg < 8:78601/149‑1 (MQ=255) aaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccGGGCtt > 3:46971‑M1/71‑76 (MQ=255) aaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccGGGCtt < 4:46971‑M1/6‑1 (MQ=255) ttttgcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATgg > 5:351013/1‑128 (MQ=35) ttttgcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATgg < 6:351013/128‑1 (MQ=35) ttttgcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc > 3:279143/1‑149 (MQ=34) ttgcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg > 1:40190/1‑149 (MQ=33) gcttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg > 2:68363/1‑147 (MQ=32) ttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGTTGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctcc > 4:274213/1‑142 (MQ=17) ttttgcttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGTTGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctcc < 3:274213/142‑1 (MQ=17) ttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc > 5:97023/1‑149 (MQ=32) cTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCg > 6:107500/1‑148 (MQ=32) gccggCTACGAAGATGGCGCGTTCTGGCGGCCGCGCGCAGGGCTTGCGGTGGGAGGTGACGGGCATGGCGGCCCGTCACGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGCCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCg < 4:279143/145‑1 (MQ=11) gctaCGCTGATTGCTATTTTAGGTGGCCGTGGGTAGGGTTTGGGGTGGGTGGTGACGGGAATGGTTGCCCGTCAAGGGGTGGGCCCCTGGATGGGGCGTGCAGGGGGGTCCTCCGGGTAGCAAGCCCGGAGCGAGGGGACCCCGGAGCg < 2:40190/146‑1 (MQ=2) gACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCg > 3:51245/1‑147 (MQ=32) gtttGCTACTTCAGGAGGCCGCGCGCTGGGGTTGCGGTGGGTGGTGACGGGAATGTAGCCCCGTAAAGCGCGGGGCCCCTGGTGGGGGCCGGCAGCGGGGTCCTCCCGGGAGCAAGCCCGGAGCTAGGGGACCCCGGAGCGTAGCGCAg < 6:68736/147‑1 (MQ=11) gATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAg > 4:230797/1‑149 (MQ=34) cGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGcc > 3:260525/1‑149 (MQ=34) ggcggCCGCGCGCTGGGCTGGCGGTGGGTGGGGCCGGGCATGGATGCCCGTCAAGGGCTGGGCCCCCGGTGGGGGCCGGCAGGGCGGTCCCCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGatgatg < 4:51245/146‑1 (MQ=11) cctcgctccGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGc < 2:233450‑M1/140‑1 (MQ=255) gcccAGGGCGTGCGGAGGGCGGTCCCGGCCAGGCATGCCCGTCAAGGGCGGGGCCCCCGGAGGGGGCCGGCAGCGCGGGCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGAc < 1:68363/146‑1 (MQ=11) cAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGa > 5:281000/1‑145 (MQ=34) cAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGa < 6:281000/145‑1 (MQ=34) aGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGtt > 6:63332/1‑149 (MQ=34) | GCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTT > NC_002947/2256024‑2256318 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |