New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2530780	NA (NA)	5 (0.090)	4/246	NT	6.5%	coding (19/369 nt)	PP_2219	hypothetical protein
	?	NC_002947	4022364 =	77 (1.310)					intergenic (‑59/+609)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease

CGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGAT  >  NC_002947/2530721‑2530928                                                            |                                                                                                                                                     ctgaGGCCCCAGGATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac                                                             >  8:205115/4‑149 (MQ=255) ctgaGGCCCCAGGATGGGGCCTCAGAGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAagataaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatca                                                               >  6:327567/4‑147 (MQ=11) cGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac                                                             <  8:9797/149‑1 (MQ=32)                  ggCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaa                                            <  7:205115/149‑1 (MQ=37)                        aGCCCTTGACGGTCATCCATGCCCGACACCAGCCTCCGCAACGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGAACAAGAACAAGATCAACATCAAGATCAAGATCAAGATCAACATAAACATcaactgcaacggcaacggacacggcaa                                      >  8:89605/1‑149 (MQ=11)                             gtGACGGGCATGGATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCGTGCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACATCAAGATcaccggcaacggaaacggcaacggcaccggc                                  >  7:248411/2‑148 (MQ=11)                                 cGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacgg                             <  4:79809/149‑1 (MQ=40)                                    gCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTGCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaa                          <  7:89605/149‑1 (MQ=255)                                         cATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCCAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaacggc                      >  5:316278/1‑148 (MQ=255)                                                     cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAAAGGCAAcag           >  3:300203/1‑147 (MQ=255)                                                            cGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGAt  >  4:179097/1‑149 (MQ=255)                                                            |                                                                                                                                                     CGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGAT  >  NC_002947/2530721‑2530928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.