New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3319134 =	49 (0.830)	4 (0.080)	4/232	NT	9.4%	intergenic (‑98/+94)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
	?	NC_002947	3319193 =	34 (0.650)					intergenic (‑157/+35)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator

CGGTCTTCGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAG  >  NC_002947/3318993‑3319276                                                                                                                                              |                                                                                                                                               gttggcctggcaccgggaacgggcattcagcccggcgatgcaggcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTc                                                                                                                                         >  3:350926‑M1/142‑149 (MQ=255) cgGTCTTCGAGCCAGTTGACGTATGACGGGTCGGGGTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGTACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCGCTc                                                                                                                                         <  1:185565/149‑1 (MQ=255)   gTCTTCGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTccc                                                                                                                                       >  5:325875/1‑149 (MQ=255)    tCTTCGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGACCTCTTTGCGAGTAGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGATccaa                                                                                                                                      >  3:154306/1‑147 (MQ=255)       ctggcaccgggaacgggcattcagcccggcgatgcagggggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAg                                                                                                                                   >  3:212416‑M1/136‑149 (MQ=255)       ctggcaccgggaacgggcattcagcccggcgatgcaggcggtgcgctattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAg                                                                                                                                   >  8:1799‑M1/136‑149 (MQ=255)       ctggcaccgggaacgggcattcagcccggcgatgcaggcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAg                                                                                                                                   >  7:80269‑M1/136‑149 (MQ=255)       ctggcaccgggaacgggcattcagcccggcgatgcaggcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAg                                                                                                                                   >  2:271193‑M1/136‑149 (MQ=255)         gAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAgg                                                                                                                                  <  2:312183/148‑1 (MQ=255)          aGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGTGCTTGCCCGCTCCCACAg                                                                                                                                   >  8:52420/1‑146 (MQ=255)          aGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGTGCTTGCCCGCTCCCACAg                                                                                                                                   <  7:52420/146‑1 (MQ=255)          aGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCg                                                                                                                                >  1:18308/1‑149 (MQ=255)             cATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTACTTCGCGGGCATGCCAACTCCcacattctca                                                                                                                              >  6:258710/1‑142 (MQ=255)              aTTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACa                                                                                                                            >  2:83907/1‑149 (MQ=255)               tttGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACa                                                                                                                            >  6:365482/1‑148 (MQ=255)                   acgggcattcagcccggcgatgcaggcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCg                                                                                                                       <  3:224255‑M1/26‑1 (MQ=255)                   aCGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCg                                                                                                                       <  6:325875/149‑1 (MQ=255)                         gACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGaa                                                                                                                  <  4:154306/148‑1 (MQ=255)                              ggcGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTGCGGCTCAAGTTGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTg                                                                                                            <  2:115974/147‑1 (MQ=255)                                cGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTgcg                                                                                                          >  8:245944/1‑149 (MQ=255)                                 gggCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTgcgc                                                                                                         <  2:18308/149‑1 (MQ=255)                                      gggTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCAc                                                                                                    <  5:89948/149‑1 (MQ=255)                                       ggTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCAc                                                                                                    <  5:365482/148‑1 (MQ=255)                                        gTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCt                                                                                                  <  1:83907/149‑1 (MQ=255)                                         tCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGCCCACAGGCGGGCCTTCCGCTGGAGATTTGCGCTGGACCtg                                                                                                 >  6:354449/1‑149 (MQ=255)                                            gcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTgg                                                                                              >  4:224255‑M1/99‑149 (MQ=255)                                                     ctctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGgcg                                                                                     >  6:352844/1‑149 (MQ=255)                                                     ctctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGgc                                                                                      <  6:179688/148‑1 (MQ=255)                                                      tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCACGACCCCAGGCGGACAAACCGCGGGAGATTTGCGCTGCACCAGTGGGAACGGgcgc                                                                                    >  3:298042/1‑149 (MQ=255)                                                      tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGGCCACAGGGGGGCCTAGCGGTGAATGTTTGCGCGGGACCGGTTGGGGCCGgcgc                                                                                    >  3:351016/1‑149 (MQ=255)                                                           gCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGccc                                                                                <  7:245944/148‑1 (MQ=255)                                                                gcGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGaa                                                                           <  5:366328/147‑1 (MQ=255)                                                                      ccGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCGTGCCCGCGCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCg                                                                    <  5:5293/149‑1 (MQ=255)                                                                            cAGGTTACGACGGCGCTGCGGCCTGAACGATCGGCTCAAGCTGGGTGTTGGCTGCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTg                                                              <  5:354449/149‑1 (MQ=38)                                                                             aGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCgg                                                                                        <  5:159371/122‑1 (MQ=255)                                                                                    gACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg                                                                   <  7:165548/136‑1 (MQ=255)                                                                                    gACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCGGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg                                                                   >  8:165548/1‑136 (MQ=255)                                                                                     aCGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAg                                                     <  5:258710/149‑1 (MQ=255)                                                                                              cGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAgc                                              <  5:352844/147‑1 (MQ=255)                                                                                                    gAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg                                                                   <  7:65537/120‑1 (MQ=255)                                                                                                    gAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCGGAAGATTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg                                                                   >  8:65537/1‑120 (MQ=255)                                                                                                       cGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGa                                    >  3:231583/1‑148 (MQ=255)                                                                                                           tcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCAc                                                                                                    >  2:12552‑M1/36‑80 (MQ=255)                                                                                                           tcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCAc                                                                                                    <  1:12552‑M1/45‑1 (MQ=255)                                                                                                             gCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAActgc                             >  1:231791/1‑149 (MQ=255)                                                                                                               tCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAActgctg                           >  6:157862/1‑149 (MQ=255)                                                                                                                 aaGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAg                                                     >  3:272982/1‑121 (MQ=255)                                                                                                                 aaGATGGGTGTTGGTTTCTTCGCGGGCTTCCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAg                                                     <  4:272982/121‑1 (MQ=255)                                                                                                                    aTGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTGCCACAGGCGGACCTACCGCTGAAGATTTGCGCTGGACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGCTCGGCGCGGGGGCGCCAACTGCTGCgggg                      >  8:284328/1‑147 (MQ=38)                                                                                                                    aTGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGt                       <  4:351016/148‑1 (MQ=255)                                                                                                                        gtgtGGGTTCCTGCGCGGGCTTGCCCGCCCCCCCCGGCCGACAACCCGCGCAAGATTGGCGCTGCACCTGGGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCCAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAg                  <  3:18588/149‑1 (MQ=255)                                                                                                                             ggTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGt                       >  7:351859/1‑139 (MQ=255)                                                                                                                             ggTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGt                       <  8:351859/139‑1 (MQ=255)                                                                                                                                      gcgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATgg     <  2:231791/148‑1 (MQ=255)                                                                                                                                       cgGGGTTGCCGGCTCCCACAGGGGGACATACCGGTGAAGATTGGCGCTGTTCCTGGGGGAGCGGGGGGGCCCGCGAAGAGGCCGGGCCTGGAATGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa   <  4:298042/149‑1 (MQ=255)                                                                                                                                       cgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATgg     >  5:104732/1‑147 (MQ=255)                                                                                                                                       cgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGGGCCAGAAACGCATCATGGaa   <  6:308544/149‑1 (MQ=255)                                                                                                                                       ccggCTTGCCCGCTCCCACACGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa   <  8:87375/147‑1 (MQ=255)                                                                                                                                        gggCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAg  >  5:81766/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                               CGGTCTTCGAGCCATTTGACGTATGACGGGTCGGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAG  >  NC_002947/3318993‑3319276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.