New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	1 (0.020)	18 (0.340)	15/238	NT	40.5%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	52 (0.970)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAG  >  NC_002947/4808032‑4808325                                                                                                                                                    |                                                                                                                                                   gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                                    <  7:270664‑M1/6‑1 (MQ=255)        tcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgccg                                                                                                                                            <  6:271488‑M1/14‑1 (MQ=255)            ccgAATTCGCGCGGTGGGGGGAAGGATTTGGGCGGGAGTGTGTCTGTGCCTGGTAGGTGTTCGGCGGTGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCttcgcg                                                                                                                                        <  6:51757/147‑1 (MQ=12)             ccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgg                                                                                                                                       <  2:30482‑M1/19‑1 (MQ=255)              cagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcggg                                                                                                                                      <  2:154666‑M1/20‑1 (MQ=255)                   attcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgcc                                                                                                                                             >  4:162877‑M1/125‑137 (MQ=255)                   attcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgcc                                                                                                                                             <  3:162877‑M1/13‑1 (MQ=255)                   attcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGgcggcg                                                                                                                                 <  3:176975‑M1/25‑1 (MQ=255)                    gcgcTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGCGATTTTCAGCGCCTGGGAGATGTACCCCGGGAGAGTTTCAGCGCCTCGGATATCCATCGCCGCACGAGagtcgcttcgccgttaaac                                                                                                                                 >  5:75955‑M1/1‑129 (MQ=255)                       ctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTc                                                                                                                              <  3:252509‑M1/28‑1 (MQ=255)                       ctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTc                                                                                                                              <  3:150862‑M1/28‑1 (MQ=255)                          tgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCg                                                                                                                             >  2:54589‑M1/118‑146 (MQ=255)                          tgggacgcgcacgcgagccccctggcgcacgcctcaatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCg                                                                                                                             <  1:54589‑M1/29‑1 (MQ=255)                           gggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAtct                                                                                                                         <  6:129673‑M1/33‑1 (MQ=255)                              gggTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGCGATTTTCAGCGCCTGGGAGGTCTTCGCAGGGAGAGTTTCAGCGCCTCGGAGATCGAGCCCCGCACGCGcgccgctacgctcctaaaccagctcctac                                                                                                                       >  3:173137‑M1/1‑119 (MQ=255)                                    gcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGgcgc                                                                                                                <  2:280062‑M1/42‑1 (MQ=255)                                      gtTGGGCGGGAGGTTTGCAGCGCCTGGGAGGGGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttc                                                                                                              <  3:25334‑M1/149‑39 (MQ=255)                                                   ttttCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagtccctc                                                                                                 >  1:280062‑M1/1‑98 (MQ=255)                                                          cgcCTGGGACGTGGTGGCGCTGGTGTTTTCTGGGTCTGGGAGGTGTTCGGCGGGAGTGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgc                                                                                             <  6:311481‑M1/146‑56 (MQ=255)                                                           ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                         <  7:331578‑M1/65‑1 (MQ=255)                                                              gatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                                       <  5:38672‑M1/67‑1 (MQ=255)                                                              gatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                                       <  3:272421‑M1/67‑1 (MQ=255)                                                                                    tttCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcat                                                                >  7:99708‑M1/1‑65 (MQ=255)                                                                                      tCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgc                                                                                                                                              >  2:45506‑M1/1‑63 (MQ=255)                                                                                      tCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgc                                                                                                                                              <  1:45506‑M1/69‑7 (MQ=255)                                                                                      gtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCCCGCGCGgcgc                                                                                                                                >  5:27710‑M1/58‑83 (MQ=255)                                                                                      gtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCCCGCGCGgcgc                                                                                                                                <  6:27710‑M1/26‑1 (MQ=255)                                                                                      ggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCaaaa                                                              >  6:38672‑M1/58‑149 (MQ=255)                                                                                            ccTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcga                                                         >  8:347006‑M1/1‑57 (MQ=255)                                                                                             gcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGgcgc                                                                                                                                >  2:287612‑M1/51‑76 (MQ=255)                                                                                             gcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGgcgc                                                                                                                                <  1:287612‑M1/26‑1 (MQ=255)                                                                                                   ggTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcggg                                                                                                                                      >  7:74286‑M1/1‑50 (MQ=255)                                                                                                   ggTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcggg                                                                                                                                      <  8:74286‑M1/64‑15 (MQ=255)                                                                                                           ccGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaa                                         >  1:76049‑M1/1‑42 (MQ=255)                                                                                                            agggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaaaa                                        >  4:201705‑M1/36‑149 (MQ=255)                                                                                                             gggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaaaa                                        <  7:244412‑M1/114‑1 (MQ=255)                                                                                                                agagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaagg                                    <  8:99708‑M1/149‑113 (MQ=255)                                                                                                                   gTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcgg                                 <  2:76049‑M1/149‑116 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAAc                                                                             >  8:167394‑M1/28‑104 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAAc                                                                             <  7:167394‑M1/77‑1 (MQ=255)                                                                                                                      tCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtataaacaaggcggtc                               <  5:23158‑M1/148‑118 (MQ=255)                                                                                                                      tCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtataaacaaggcggtc                               <  5:28520‑M1/148‑118 (MQ=255)                                                                                                                      tCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtc                               <  1:321827‑M1/148‑118 (MQ=255)                                                                                                                      cgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCCCTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgcc                              <  4:283893‑M1/124‑1 (MQ=255)                                                                                                                       gaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgccg                             <  3:81895‑M1/125‑1 (MQ=255)                                                                                                                        aaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgccgc                            >  8:244412‑M1/24‑149 (MQ=255)                                                                                                                        aaacaaacgtaggagcggggttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgccgc                            >  4:272421‑M1/24‑149 (MQ=255)                                                                                                                           gcCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgc                         <  7:347006‑M1/149‑124 (MQ=255)                                                                                                                                        gggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATcc            >  5:164376‑M1/8‑149 (MQ=255)                                                                                                                                         gcgcCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggag           <  3:25805‑M1/149‑138 (MQ=255)                                                                                                                                          gtttaCCCGCGAAGCGCCGCGCGGTCGGCTCTAGATCTCACAGGCTCTGAAAATCCTACGGCAAACACCTCAAAATTCCAACGCCTTCCACTCAAAATTCCCACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa          >  1:267697‑M1/6‑149 (MQ=255)                                                                                                                                          gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCACCGCCGTCCACTCAAAATTAGACAGCCGCCCCCTGAAAAGTCCACCGCCGCCAACGCTCGAAAATCca           <  3:207004‑M1/143‑1 (MQ=255)                                                                                                                                          gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCATCCGGCAAACTCCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa          >  8:331578‑M1/6‑149 (MQ=255)                                                                                                                                           gccgccCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggaggg         <  3:295545‑M1/149‑140 (MQ=255)                                                                                                                                              gcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggag           >  2:130981‑M1/1‑7 (MQ=255)                                                                                                                                              gcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggag           <  1:130981‑M1/144‑138 (MQ=255)                                                                                                                                                ccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattgg    >  2:286194‑M1/1‑5 (MQ=255)                                                                                                                                                ccgcGcggcgcttcgcggggaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattgg    <  3:6710‑M1/149‑145 (MQ=255)                                                                                                                                                 cgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggc   <  4:324897‑M1/149‑146 (MQ=255)                                                                                                                                                  gcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggcc  <  6:303419‑M1/149‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAG  >  NC_002947/4808032‑4808325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.