New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5545533 =	1 (0.020)	5 (0.130) +GATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTG	3/172	NT	19.0%	intergenic (‑673/+204)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5974684	64 (1.090)					intergenic (+996/‑97)	PP_5726/PP_5727	hypothetical protein/hypothetical protein

ATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAAC  >  NC_002947/5545439‑5545681                                                                                               |                                                                                                                                                     ttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatcTAGAAAAGCATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTa                                                                                                 >  1:132025‑M1/95‑148 (MQ=255)    tttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatcTAGAAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGAtc                                                                                             <  7:211825‑M1/58‑1 (MQ=255)    tttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatcTAGAAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGAtc                                                                                             <  7:217535‑M1/58‑1 (MQ=255)        atgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatcTAGAAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCg                                                                                          >  8:211825‑M1/88‑148 (MQ=255)        atgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatcTAGAAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCg                                                                                          >  8:217535‑M1/88‑148 (MQ=255)                                                                                       gggAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTa           <  1:253907/148‑1 (MQ=31)                                                                                               tAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAAc  <  5:121189/149‑1 (MQ=38)                                                                                               |                                                                                                                                                     ATTAACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAAC  >  NC_002947/5545439‑5545681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.