New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5585676 = | 49 (0.830) | 5 (0.090) | 3/250 | NT | 9.5% | coding (56/2259 nt) | parC | DNA topoisomerase IV subunit A |
? | NC_002947 | 5585713 = | 48 (0.850) | coding (19/2259 nt) | parC | DNA topoisomerase IV subunit A |
GTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATG > NC_002947/5585531‑5585817 | gtgCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTca < 1:176884/148‑1 (MQ=255) catcgtggtgccgggcctggatgggtccaccgtactgctgggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaact < 8:95355‑M1/1‑1 (MQ=255) tgCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTcag < 6:246368/148‑1 (MQ=255) ttGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTcagccag > 1:23068/1‑149 (MQ=255) catcggcatcgAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCagcgag > 6:155513/1‑149 (MQ=255) atcgAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGt > 4:331199/1‑148 (MQ=255) cccAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGcc > 4:127989/1‑149 (MQ=255) tCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAg > 7:251577/1‑149 (MQ=255) tCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCt > 1:231822/1‑148 (MQ=255) tCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCt > 1:330566/1‑148 (MQ=255) aTGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAg > 2:88742/1‑149 (MQ=255) aTGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGACAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAg > 4:133938/1‑149 (MQ=255) aTGGCGTAGACGATGCGTCGCTACACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAg > 8:250352/1‑149 (MQ=255) tAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAg < 2:231822/149‑1 (MQ=255) ggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTc > 7:340683‑M1/108‑148 (MQ=255) cGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATTAACACGTAAATGGTTTACACATGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt < 1:299680/148‑1 (MQ=255) gATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGt > 4:241424/1‑149 (MQ=255) gATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGt > 5:122469/1‑149 (MQ=255) cGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGc < 5:375475/148‑1 (MQ=255) ttcACCGGCTTCAGGCCGTCGGCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCg < 5:65222/147‑1 (MQ=255) gCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg > 4:189920/1‑149 (MQ=255) cACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg < 5:275256/148‑1 (MQ=255) cACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg < 8:130728/148‑1 (MQ=255) aCCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGc < 2:367593/149‑1 (MQ=255) aCCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATCGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGc < 2:23068/149‑1 (MQ=255) ccGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGcc > 2:51675/1‑149 (MQ=255) cTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGt < 3:331199/149‑1 (MQ=255) gCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCattat > 6:280114/1‑149 (MQ=255) tCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCa < 1:88742/149‑1 (MQ=255) gCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg < 2:144442/130‑1 (MQ=255) gCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg > 1:144442/1‑130 (MQ=255) gCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAgg < 1:183610/149‑1 (MQ=255) gCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAg < 5:155513/148‑1 (MQ=255) gCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAg < 8:251577/148‑1 (MQ=255) gATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTc > 4:348577/1‑149 (MQ=255) cAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCgcagc < 3:127989/149‑1 (MQ=255) aaGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTTTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTTGCgcagca < 3:133938/149‑1 (MQ=255) aCGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATg > 4:110070/1‑149 (MQ=255) cGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATgg < 3:189920/149‑1 (MQ=255) aCGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCt < 4:208208/149‑1 (MQ=255) aTGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTa > 2:22537/1‑148 (MQ=255) agt‑‑agtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTc < 7:250352/149‑1 (MQ=255) gt‑‑agtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCACGCATGGTGCCACCGCGCTGGGTAAATTc < 1:22537/149‑1 (MQ=255) t‑‑agtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCaa < 5:280114/149‑1 (MQ=255) gtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCCGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAgt > 4:127754/1‑149 (MQ=255) gtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAgt > 3:204761/1‑149 (MQ=255) ccgcatgagcgactcactggaacTCAGTCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa > 1:44078‑M1/24‑60 (MQ=255) ccgcatgagcgactcactggaacTCAGTCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa > 1:38417‑M1/24‑60 (MQ=255) ccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa < 2:44078‑M1/37‑1 (MQ=255) ccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa < 2:38417‑M1/37‑1 (MQ=255) gTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGttgttg > 7:165278/1‑148 (MQ=255) aGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAg > 7:95355/1‑149 (MQ=255) ggCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAg < 3:348577/148‑1 (MQ=255) cTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCa < 3:110070/149‑1 (MQ=255) tGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCAc > 8:6660/1‑149 (MQ=255) tCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTc < 3:241424/148‑1 (MQ=255) ggTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATg > 6:20035/1‑149 (MQ=255) | GTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGT‑‑AGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCA‑GCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATG > NC_002947/5585531‑5585817 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |