New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 71181	50 (0.850)	3 (0.050)	3/250	NT	5.8%	coding (724/2055 nt)	glyS	glycine‑tRNA ligase subunit beta
	?	NC_002947	= 71208	49 (0.870)					coding (697/2055 nt)	glyS	glycine‑tRNA ligase subunit beta

TTCTGGTTGTCCTGCATGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTCCGGATGGTGGAAG  >  NC_002947/71063‑71347                                                                                                                                                  |                                                                                                                                            ttCTGGTTGTCCTGCATGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCctg                                                                                                                                          <  8:335855‑M2/149‑4 (MQ=255)           ccTGCATGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGc                                                                                                                                 >  2:218354/1‑148 (MQ=255)             tGCATGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAg                                                                                                                              >  8:94413/1‑149 (MQ=255)             tGCATGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACCATGGCCGTGCCTTCCTGCTGCATGGCCAg                                                                                                                              >  3:298684/1‑149 (MQ=255)                aTGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGctc                                                                                                                           >  3:350678/1‑149 (MQ=255)                  ggtggtGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGctct                                                                                                                          <  8:98303/148‑1 (MQ=255)                    tggtgATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCg                                                                                                                       <  5:249248/149‑1 (MQ=255)                    tggtgATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCg                                                                                                                       <  5:243890/149‑1 (MQ=255)                     ggtgATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCgg                                                                                                                      >  3:366524/1‑149 (MQ=255)                          tCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGc                                                                                                                 <  7:94413/149‑1 (MQ=255)                             gggCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTg                                                                                                              >  7:197059/1‑149 (MQ=255)                              ggCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGc                                                                                                             <  8:197059/149‑1 (MQ=255)                                      gCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCa                                                                                                       <  4:326619/147‑1 (MQ=255)                                            ccTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCgcgg                                                                                               <  7:335855/149‑1 (MQ=255)                                                       cGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCTTGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGaa                                                                                    <  1:276519/149‑1 (MQ=255)                                                       cGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCg                                                                                      >  1:165555/1‑147 (MQ=255)                                                            ctcGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCATCTCTGCGGTACGCTTGCTGATCAGCTc                                                                                                   <  5:196036/129‑1 (MQ=255)                                                            ctcGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAACTCTGCGGTACGCTTGCTGATCAGCTc                                                                                                   >  6:196036/1‑129 (MQ=255)                                                               gAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCg                                                                                      >  3:123789/1‑139 (MQ=255)                                                               gAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCg                                                                                      <  4:123789/139‑1 (MQ=255)                                                               gAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGc                                                                              >  4:36302/1‑147 (MQ=255)                                                                   gAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGAc                                                                        <  1:218354/149‑1 (MQ=255)                                                                     gCACACCATCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGaa                                                                                    >  3:249013/1‑135 (MQ=255)                                                                     gCACACCATCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGaa                                                                                    <  4:249013/135‑1 (MQ=255)                                                                      cacaCCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTa                                                                     <  2:165555/149‑1 (MQ=255)                                                                          ccAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGcc                                                                 <  5:356838/149‑1 (MQ=255)                                                                            aGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCtt                                                               >  3:22093/1‑149 (MQ=255)                                                                             gCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTg                                                              >  1:43827/1‑149 (MQ=255)                                                                             gCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTg                                                              >  6:265470/1‑149 (MQ=255)                                                                             gCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTAGGCCAGGACGTAGGCATTg                                                              >  2:331665/1‑149 (MQ=255)                                                                                      gCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCt                                                     >  5:195648/1‑149 (MQ=255)                                                                                        cACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTc                                                   <  4:366524/149‑1 (MQ=255)                                                                                          cTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGa                                                 >  3:211108/1‑149 (MQ=255)                                                                                            cGACCAGAGCGGTCACTTCGTCAAGCAGCGCCGGTGGCACGAGGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACg                                               <  4:298684/149‑1 (MQ=255)                                                                                               ccAGAGCGGTCACTTCGTCCAGGAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAg                                            >  7:56213/1‑149 (MQ=255)                                                                                                cAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGt                                                                      <  2:155426/122‑1 (MQ=255)                                                                                                cAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGt                                                                      >  1:155426/1‑122 (MQ=255)                                                                                                       gTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTGCGCGGTAGTTGGCCgg                                    >  2:325933/1‑149 (MQ=255)                                                                                                          aCTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGggt                                 >  6:247041/1‑149 (MQ=255)                                                                                                              cGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGggtggt                              <  3:36302/148‑1 (MQ=255)                                                                                                              cGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGggtgg                               <  6:195648/147‑1 (MQ=255)                                                                                                               gTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCctgctggacgaagtgaccgctctggtcgagtggccggtgccgctggtgtgctcgttcgaggagcgtttcctcgaggtgccgcaagaagccctgatccccac                                        <  7:183778‑M2/137‑102 (MQ=255)                                                                                                               gTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCctgctggacgaagtgaccgctctggtcgagtggccggtgccgctggtgtgctcgttcgaggagcgtttcctcgaggtgccgcaagaagccctgatcaccac                                        >  8:183778‑M2/1‑36 (MQ=255)                                                                                                                tCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGtgat                           >  1:265117/1‑149 (MQ=255)                                                                                                                  cagcagCGCCGGTGGCACGATGGCCGTGCCTTCctgctggacgaagtgaccgctctggtcgagtggccggtgccgctggtgtgctcgttcgaggagcgtttcctcgaggtgccgcaagaagccctgatcaccaccatgcaggacaac                           <  7:76528‑M2/147‑115 (MQ=255)                                                                                                                  cagcagCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGtgatg                          <  5:247041/148‑1 (MQ=255)                                                                                                                  cagcagCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGtgatg                          <  4:350678/148‑1 (MQ=255)                                                                                                                      agcGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCAc                     >  6:209191/1‑149 (MQ=255)                                                                                                                             gTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTcc              <  4:211108/149‑1 (MQ=255)                                                                                                                                  aCGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTCCGGAtg         >  2:46729/1‑149 (MQ=255)                                                                                                                                     aTGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTCCGGAtggtg      <  2:265117/149‑1 (MQ=255)                                                                                                                                        gCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTCCGGATGGTGGaa   <  4:22093/149‑1 (MQ=255)                                                                                                                                         ccGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTCCGGATGGTGGAAg  <  2:43827/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                            TTCTGGTTGTCCTGCATGGTGGTGATCAGGGCTTCTTGCGGCACCTCGAGGAAACGCTCCTCGAACGAGCACACCAGCGGCACCGGCCACTCGACCAGAGCGGTCACTTCGTCCAGCAGCGCCGGTGGCACGATGGCCGTGCCTTCCTGCTGCATGGCCAGCTCTGCGGTACGCTTGCTGATCAGCTCGCGGCGCTCGGCGAAGTCGGCCAGGACGTAGGCCTTGCGCAGGTCTTCGACGTAGTTGGCCGGGGTGGTGATGAGCACGTTTTCCGGATGGTGGAAG  >  NC_002947/71063‑71347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.