New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2252519 =	36 (0.610)	3 (0.050)	3/244	NT	8.1%	coding (420/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit
	?	NC_002947	2252563 =	35 (0.640)					coding (464/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit

TCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGC  >  NC_002947/2252419‑2252711                                                                                                                                                 |                                                                                                                                                     tcatTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATAATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTAACAGCTGACCATCGACCTgcatgcg                                                                                                                                                  >  7:321767/1‑149 (MQ=255) aggccgatatcgtccagaccgttgagcaggcagtgcttgcggaacgcatcgatctcgaagtgcagcaccttgccatccgggcgggtcaccgcctgcgcctGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcag                                                                                                                                                     >  1:57576‑M1/101‑146 (MQ=255) aggccgatatcgtccagaccgttgagcaggcagtgcttgcggaacgcatcgatctcgaagtgcagcaccttgccatccgggcgggtcaccgcctgcgcctGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcag                                                                                                                                                     <  2:57576‑M1/46‑1 (MQ=255)    ttGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcaggcgcag                                                                                                                                               >  5:197286/1‑149 (MQ=255)    ttGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcaggcgcag                                                                                                                                               <  6:12482/149‑1 (MQ=255)      gcgcCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcaggcgcaggc                                                                                                                                             >  8:204591/1‑149 (MQ=255)         ccGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGt                                                                                                                                          <  4:120564/149‑1 (MQ=255)          cGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGt                                                                                                                                          >  8:20598/1‑148 (MQ=255)                   ccGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGAcccgccc                                                                                                                                 <  7:204591/148‑1 (MQ=255)                     gACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGa                                                                                                                              >  5:84624/1‑149 (MQ=255)                       cATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATg                                                                                                                            <  1:84503/149‑1 (MQ=255)                            tcttcAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCaa                                                                                                                        <  7:248736/148‑1 (MQ=255)                                 aacaacAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAGGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGtgc                                                                                                                   <  5:111314/148‑1 (MQ=255)                                          ttCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTc                                                                                                           >  2:58216/1‑147 (MQ=255)                                               gAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATc                                                                                                     >  4:159347/1‑148 (MQ=255)                                               gAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCg                                                                                                    <  6:197286/149‑1 (MQ=255)                                                 aCGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGAt                                                                                                  <  3:159347/149‑1 (MQ=255)                                                        gctacCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTc                                                                                            <  2:109066/148‑1 (MQ=255)                                                         ctgcCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTcc                                                                                           <  6:13598/148‑1 (MQ=255)                                                                      tcAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCActgcctg                                                                             >  2:29470/1‑149 (MQ=255)                                                                             tGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACg                                                                      <  5:369577/149‑1 (MQ=255)                                                                                   agtggtcgaGCTGTTCAAGCAGGTCGAAGCCAACCCGTGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGTATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTg                                                                 <  8:321767/142‑1 (MQ=255)                                                                                              tGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGc                                                     >  3:53469/1‑149 (MQ=255)                                                                                               gTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGATGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGcc                                                    >  3:30690/1‑149 (MQ=255)                                                                                                   ctgcaggtcgatggtcagctggtagcccgggttggcttcgacctgcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCt                                                   <  2:57576‑M2/100‑1 (MQ=255)                                                                                                   ctgcaggtcgatggtcagctggtagcccgggttggcttcgacctgcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCt                                                   >  1:57576‑M2/47‑146 (MQ=255)                                                                                                   aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCt                                                   >  4:302708/1‑146 (MQ=255)                                                                                                   aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCt                                                   <  3:302708/146‑1 (MQ=255)                                                                                                   aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGAc                                                >  2:167066/1‑149 (MQ=255)                                                                                                       aggtcgatggtcagctggtagcccgggttggcttcgacctgcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTg                                            >  5:102304‑M2/43‑149 (MQ=255)                                                                                                       AGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTg                                            >  1:58216‑M1/1‑149 (MQ=255)                                                                                                         GTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCa                                          >  8:323454‑M1/1‑149 (MQ=255)                                                                                                                ccAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGc                                   >  2:241740/1‑149 (MQ=255)                                                                                                                  aaCCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGATCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGa                                 >  5:291396/1‑149 (MQ=255)                                                                                                                    cccGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCt                                                                  <  6:34580/114‑1 (MQ=255)                                                                                                                    cccGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCt                                                                  >  5:34580/1‑114 (MQ=255)                                                                                                                        ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                                   <  5:368028/109‑1 (MQ=255)                                                                                                                        ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                                   <  3:214771/109‑1 (MQ=255)                                                                                                                        ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                                   >  6:368028/1‑109 (MQ=255)                                                                                                                        ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                                   >  4:214771/1‑109 (MQ=255)                                                                                                                               aGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGcc                    >  1:258617/1‑149 (MQ=255)                                                                                                                                gCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCt                   <  2:258617/149‑1 (MQ=255)                                                                                                                                 cTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCtt                  <  6:84624/149‑1 (MQ=255)                                                                                                                                   gACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCa                                          >  8:260597/1‑123 (MQ=255)                                                                                                                                   gACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCa                                          <  7:260597/123‑1 (MQ=255)                                                                                                                                    aCCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTc                 <  4:53469/147‑1 (MQ=255)                                                                                                                                      cATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAg             >  2:170272/1‑149 (MQ=255)                                                                                                                                        tcgacctgcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGc            >  7:226545‑M2/10‑148 (MQ=255)                                                                                                                                           acctgcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGc                                           >  3:173061‑M2/7‑114 (MQ=255)                                                                                                                                           acctgcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGc                                           <  4:173061‑M2/108‑1 (MQ=255)                                                                                                                                               gcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCAcc    >  4:241265‑M2/3‑149 (MQ=255)                                                                                                                                               gcAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCAcc    >  2:126303‑M2/3‑149 (MQ=255)                                                                                                                                                 aggcgcaggagGGGACCCGCCCGGATGGCAAGGTGATGCACTTCGAGATGGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGTACGATATCGGCCTTACCTTGCAGGACATCGACTCGATCAAGGCCTTCGAAGCCAAGCACcgc  <  4:30690/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGC  >  NC_002947/2252419‑2252711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.