New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2957835	57 (0.970)	4 (0.070)	4/252	NT	7.6%	coding (595/1494 nt)	PP_2589	aldehyde dehydrogenase family protein
	?	NC_002947	= 2957926	42 (0.740)					coding (686/1494 nt)	PP_2589	aldehyde dehydrogenase family protein

GCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGCGGCGGCAAGAGCCCAAACCTGGTGTTC  >  NC_002947/2957781‑2958065                                                                                                                                                  |                                                                                                                                            gCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgg                                                                                                                                           >  1:50870‑M2/1‑146 (MQ=255)     ccGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCt                                                                                                                                       <  3:137218/148‑1 (MQ=255)     ccGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCt                                                                                                                                       <  4:77136/148‑1 (MQ=255)     ccGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTg                                                                                                                                      >  3:263038/1‑149 (MQ=255)           accgCGTGGTCCTCAAGCCCGCCGAGCACTCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCGGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCAccc                                                                                                                                 <  8:288493/145‑1 (MQ=255)                   gTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGa                                                                                                                        <  7:36710/149‑1 (MQ=255)                     aCTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACt                                                                                                                      >  8:310394/1‑149 (MQ=255)                       tCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGc                                                                                                                    >  4:264403/1‑149 (MQ=255)                         aaGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGc                                                                                                                    <  3:270305/147‑1 (MQ=255)                            cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCGGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTg                                                                                                                 >  5:317981/1‑147 (MQ=255)                            cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTg                                                                                                                 <  6:317981/147‑1 (MQ=255)                            cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGt                                                                                                               <  5:247532/149‑1 (MQ=255)                            cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGt                                                                                                               <  3:264403/149‑1 (MQ=255)                                  gAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCAc                                                                                                         <  7:352656/149‑1 (MQ=255)                                  gAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCAc                                                                                                         <  1:223121/149‑1 (MQ=255)                                      aaTCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTCGAAGCCGGTGTGCCGGAAGGCGGGATGAACGTGCTGCCGGGCCTGGGCGAGCAGGCCGCGCAGGCGCTGGGCCTGCACCCGGATGAGGACTGCCTGGTATTCACCgg                                                                                                      >  5:206304/1‑148 (MQ=255)                                          aCCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGATGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTcc                                                                                                  <  1:180757/148‑1 (MQ=255)                                          aCCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTc                                                                                                           <  8:133327/139‑1 (MQ=255)                                          aCCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTc                                                                                                           >  7:133327/1‑139 (MQ=255)                                                  cGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGt                                                                                          <  4:263038/148‑1 (MQ=255)                                                  cGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGt                                                                                          <  7:310394/148‑1 (MQ=255)                                                     cccTGCGCCTGGCCGAGCTGGGGCTGGAAGGCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGGCGGGGCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCTGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGc                                                                                      <  6:206304/149‑1 (MQ=255)                                                      ccTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaacggtgattgctcggcgggcttgagtaccacgctgttaccggcagc                                                                                      <  1:236240‑M2/148‑56 (MQ=255)                                                      ccTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCAc                                                                                                >  5:217948/1‑138 (MQ=255)                                                      ccTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCAc                                                                                                <  6:217948/138‑1 (MQ=255)                                                       cTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCaa                                                                                    <  1:167741/149‑1 (MQ=255)                                                            ccTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaatggtgattgctcggcgggcttgagtaccacgctgttaccggcagccagcgcc                                                                               <  3:246299‑M2/149‑63 (MQ=255)                                                                 cccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg                                                                          >  3:59789/1‑149 (MQ=255)                                                                 cccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg                                                                          <  6:239516/149‑1 (MQ=255)                                                                  ccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg                                                                          >  1:209170/1‑148 (MQ=255)                                                                  ccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg                                                                          >  4:87169/1‑148 (MQ=255)                                                                     gCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaacggtgattgctcggcgggcttgagtaccacgctgttaccggcagccagcgccggggccagc                                                                      >  2:236240‑M2/1‑78 (MQ=255)                                                                           gcTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgg                                                                                                                                           >  8:305142‑M2/1‑72 (MQ=255)                                                                           gcTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCgg                                                                >  4:257745/1‑149 (MQ=255)                                                                               gAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGgcg                                                              >  7:263875/1‑147 (MQ=255)                                                                                            cGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAg                                               <  2:209170/149‑1 (MQ=255)                                                                                             ggAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTggg                                                                                       <  1:359822/108‑1 (MQ=255)                                                                                             ggAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTggg                                                                                       >  2:359822/1‑108 (MQ=255)                                                                                                aGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaatggtgattgctcggcgggcttgagtaccacgctgttaccggcagccagcgccggggccagcttccaggcggccatatcgagcgggaag                                           >  4:246299‑M2/1‑51 (MQ=255)                                                                                                     tGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTCCTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTgg                                      >  4:227302/1‑149 (MQ=255)                                                                                                       cTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCt                                    >  1:72897/1‑149 (MQ=255)                                                                                                          aaCGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTg                                   >  1:104951/1‑147 (MQ=255)                                                                                                              gcctgCCCGGCCTGCTCGCCCAGGCCCGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTgc                             >  2:271620/4‑149 (MQ=255)                                                                                                               cctgCCCGGCCTGCTCGCCCAGGCCCGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTgcg                            >  4:27236/3‑149 (MQ=255)                                                                                                                 tgCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGgc                                                               <  3:367172/112‑1 (MQ=255)                                                                                                                 tgCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACACGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTAATTCATGCAGTACTCGgc                                                               >  4:367172/1‑112 (MQ=255)                                                                                                                  gCCCGGCCTGCTCGCCCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTc                                                  >  3:115121/1‑124 (MQ=255)                                                                                                                  gCCCGGCCTGCTCGCCCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTc                                                  <  4:115121/124‑1 (MQ=255)                                                                                                                   ccGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGcggcgg                        <  3:87169/149‑1 (MQ=255)                                                                                                                   ccGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGcggcgg                        <  8:263875/149‑1 (MQ=255)                                                                                                                                         ggCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGCGGCGGCAAGAGCCCAAACCTGGTGTTc  <  3:257745/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                            GCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGCGGCGGCAAGAGCCCAAACCTGGTGTTC  >  NC_002947/2957781‑2958065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.