New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 301624634 (0.580)3 (0.050) 3/252 NT 8.6% coding (169/2283 nt) bcsB cellulose synthase and translocator subunit
?NC_002947 = 3016268 31 (0.550)coding (191/2283 nt) bcsB cellulose synthase and translocator subunit

TTTACCGCCTTGTCGCAGAGCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGAACCTGTCGCACTTGCGCGTCTACCTCAACGACGAGCTGATGGGCGTA  >  NC_002947/3016123‑3016416
                                                                                                                                                 |                                                                                                                                                    
tttACCGCCTTGTCGCAGAGCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTac                                                                                                                                                    >  8:243970‑M2/1‑146 (MQ=255)
               cAGAGCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCaa                                                                                                                                                <  4:320881/137‑1 (MQ=255)
               cAGAGCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCaa                                                                                                                                                >  3:320881/1‑137 (MQ=255)
                agagCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAg                                                                                                                                         <  6:125402/143‑1 (MQ=255)
                agagCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAg                                                                                                                                         >  5:125402/1‑143 (MQ=255)
                    cgccgcTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGt                                                                                                                               >  7:333837/1‑149 (MQ=255)
                       cgcTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTg                                                                                                                            <  4:225635/149‑1 (MQ=255)
                        gctgctgctTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTgg                                                                                                                           <  3:113402/149‑1 (MQ=255)
                                ttCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTc                                                                                                                   >  1:330682/1‑149 (MQ=255)
                                  ccGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTcgc                                                                                                                 >  1:202005/1‑149 (MQ=255)
                                    gTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAACCTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGa                                                                                                               >  5:158748/1‑149 (MQ=255)
                                    gTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGa                                                                                                               <  8:52012/149‑1 (MQ=255)
                                     tAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAATCTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGAt                                                                                                              >  1:258667/1‑149 (MQ=255)
                                         tCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGcc                                                                                                          >  5:267849/1‑149 (MQ=255)
                                           cGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTg                                                                                                        <  2:258667/149‑1 (MQ=255)
                                            gCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGc                                                                                                                          <  3:196885/130‑1 (MQ=255)
                                            gCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGc                                                                                                                          >  4:196885/1‑130 (MQ=255)
                                                   gAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGa                                                                                                >  3:56022/1‑149 (MQ=255)
                                                          cGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCaac                                                                                         <  7:293704/149‑3 (MQ=255)
                                                                ccacacccacGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCaa                                                                                   >  7:48345/1‑149 (MQ=255)
                                                                  acacccacGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACt                                                                                 >  3:52901/1‑149 (MQ=255)
                                                                     cccacGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTgg                                                                               >  2:275596/1‑148 (MQ=255)
                                                                      ccacGGTACCAAACTGGCAGGTTGCGAACACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGAc                                                                             <  8:333837/149‑1 (MQ=255)
                                                                        acGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGc                                                                                             >  2:48493/1‑131 (MQ=255)
                                                                        acGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGc                                                                                             <  1:48493/131‑1 (MQ=255)
                                                                               cAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCt                                                                    >  3:122313/1‑149 (MQ=255)
                                                                                              cGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTtgct                                                      <  8:22023/148‑1 (MQ=255)
                                                                                                  aaCCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCg                                                  >  7:20778/1‑148 (MQ=255)
                                                                                                   aCCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGaa                                                <  2:202005/149‑1 (MQ=255)
                                                                                                          agcagcTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGAACCTGTCg                                         >  2:307657/1‑149 (MQ=255)
                                                                                                                  gggCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGAACCTGTCGCACTTgcg                                 >  6:89286/1‑149 (MQ=255)
                                                                                                                   ggCATGCGTCCGACAGCCTGCTGCTGGGGGTacgcatgcccaagctgctcgaaggttttcgcaacctgccagtttggtaccgtgggtgtgggtaccgcaggctcggcaagcggagctacggaagcagcagcggcgctctgcgacaaggc                                <  5:285455‑M2/149‑119 (MQ=255)
                                                                                                                    gCATGCGTCCGACAGCCTGCTGCTGGGGGTacgcatgcccaagctgctcgaaggttttcgcaacctgccagtttggtaccgtgggtgtgggtaccgcaggctcggcaagcggagctacggaagcagcagcggcgctctgc                                        <  7:307779‑M2/140‑111 (MQ=255)
                                                                                                                    gCATGCGTCCGACAGCCTGCTGCTGGGGGTacgcatgcccaagctgctcgaaggttttcgcaacctgccagtttggtaccgtgggtgtgggtaccgcaggctcggcaagcggagctacggaagcagcagcggcgctctgc                                        >  8:307779‑M2/1‑30 (MQ=255)
                                                                                                                                    aagctggtgGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGAACCTGTCGCACTTGCGAGTCTACCTCAAcgacga               <  1:361553/147‑1 (MQ=255)
                                                                                                                                          ctgGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCATCCTTGCTGCCGAACCTGTCGCACTTGCGCGTCTACCTCAACGACGAGCTGa          <  1:275596/148‑1 (MQ=255)
                                                                                                                                          ctgGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGAACCTGTCGCACTTGCGCGTCTACCTCAACGACGAGCTGAt         >  1:148570/1‑149 (MQ=255)
                                                                                                                                                 tacgcatgcccaagctgctcgaaggttttcgcaacctgccagtttggtaccgtgggtgtgggtaccgcaggctcggcaagcggagctacggaagcagcagcggcgctctgcgacaaggcggtaaacagcgccatcgccaggccccaggt  >  6:285455‑M2/1‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TTTACCGCCTTGTCGCAGAGCGCCGCTGCTGCTTCCGTAGCTCCGCTTGCCGAGCCTGCGGTACCCACACCCACGGTACCAAACTGGCAGGTTGCGAAAACCTTCGAGCAGCTTGGGCATGCGTCCGACAGCCTGCTGCTGGGGGTACGCAACAGTGAGCATATCGAGTTTGGCCTGCGTCGCGATCGCCTGGCCACCGATGCCAGCTTGCAACTGGACTACACGCCTTCGCCAGCCTTGCTGCCGAACCTGTCGCACTTGCGCGTCTACCTCAACGACGAGCTGATGGGCGTA  >  NC_002947/3016123‑3016416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.