New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3693099 =	51 (0.870)	4 (0.070)	4/254	NT	8.0%	coding (527/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	3693147 =	43 (0.750)					coding (479/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein

CGCCTTGCCAGAAGCCAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCG  >  NC_002947/3693001‑3693295                                                                                                                                                   |                                                                                                                                                     aaggcctggtgttccggtgccttgcagatcgatcgcgcgctgattactgcctgggatgaggccgagcagccgcaattggtggcaatcgagctgtcacaGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCtgt                                                                                                                                                    >  1:16242‑M1/99‑149 (MQ=255)   ccTTGCCAGAAGCCAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGa                                                                                                                                                  <  6:93796/149‑1 (MQ=255)       gCCAGAAGCCAGGGCGCGAGAGGTATTGGCCTAGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACa                                                                                                                                                <  3:270510/147‑1 (MQ=255)         cAGAAGCCAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTc                                                                                                                                            >  5:37762/1‑149 (MQ=255)             aGCCAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGAtt                                                                                                                                        <  1:367683/149‑1 (MQ=255)             aGCCAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGAtt                                                                                                                                        <  1:354433/149‑1 (MQ=255)               ccAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTga                                                                                                                                      >  4:207306/1‑148 (MQ=255)                cAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGc                                                                                                                                      >  3:67711/1‑148 (MQ=255)                 aGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCCTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGcca                                                                                                                                    >  7:145552/1‑149 (MQ=255)                   ggCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGccac                                                                                                                                   <  8:145552/148‑1 (MQ=255)                     cttgcagatcgatcgcgcgctgattactgcctgggatgaggccgagcagccgcaattggtggcaatcgagctgtcacaGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCtg                                                                                                                                                     <  2:300550‑M1/50‑1 (MQ=255)                     cttgcagatcgatcgcgcgctgattactgcctgggatgaggccgagcagccgcaattggtggcaatcgagctgtcacaGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCtg                                                                                                                                                     >  1:300550‑M1/79‑128 (MQ=255)                      gcgAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAAt                                                                                                                               <  7:299690/149‑1 (MQ=255)                        gagaGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTg                                                                                                                             >  7:268924/1‑149 (MQ=255)                             gTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGc                                                                                                                            >  4:35326/1‑145 (MQ=255)                             gTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGc                                                                                                                            <  3:35326/145‑1 (MQ=255)                                              cGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATc                                                                                                           <  6:47490/145‑1 (MQ=255)                                              cGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATc                                                                                                           >  5:47490/1‑145 (MQ=255)                                              cGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAg                                                                                                       <  8:268924/149‑1 (MQ=255)                                                   aGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGt                                                                                                  <  6:36077/149‑1 (MQ=255)                                                         ccTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCa                                                                                             <  3:101102/148‑1 (MQ=255)                                                                  tCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGcgatc                                                                                   <  4:67711/149‑1 (MQ=255)                                                                    gTTGAACGCAACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGcgatcga                                                                                 >  5:53832/1‑149 (MQ=255)                                                                        aaCGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCt                                                                              <  6:37762/148‑1 (MQ=255)                                                                             cACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAgg                                                                        >  3:59796/1‑149 (MQ=255)                                                                                 tCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCAcc                                                                    >  2:342957/1‑149 (MQ=255)                                                                                 tCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCAGCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCAcc                                                                    >  8:49096/1‑149 (MQ=255)                                                                                        tGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAacac                                                             >  8:238015/1‑149 (MQ=255)                                                                                        tGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAacac                                                             >  7:331613/1‑149 (MQ=255)                                                                                                gTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACAcc                                                            <  7:265304/142‑1 (MQ=255)                                                                                                gTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACAcc                                                            >  8:265304/1‑142 (MQ=255)                                                                                                acagccaagccagggcctgaacattgagcactggcaggccgttggcatggcTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCtt                                                     >  1:16242‑M2/52‑149 (MQ=255)                                                                                                 cagccaagccagggcctgaacattgagcactggcaggccgttggcatggcTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAg                                                                         <  2:300550‑M2/78‑1 (MQ=255)                                                                                                 cagccaagccagggcctgaacattgagcactggcaggccgttggcatggcTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAg                                                                         >  1:300550‑M2/51‑128 (MQ=255)                                                                                                   gccaagccagggcctgaacattgagcactggcaggccgttggcatggcTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGt                                                  <  2:16242‑M2/101‑1 (MQ=255)                                                                                                    CCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTg                                                 <  5:102609‑M1/149‑1 (MQ=255)                                                                                                    CCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTg                                                 <  1:108940‑M1/149‑1 (MQ=255)                                                                                                          cAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGtt                                            >  6:197280/1‑148 (MQ=255)                                                                                                           aaCGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTga                                          <  3:30538/149‑1 (MQ=255)                                                                                                             gggCCTGCCAGTGCTAATTGTTCAGGCCCTGGCTTGGCTGTTACTGCTCGATTGCCACCAATTGCGGCTGCTCGGCGTCATCCCTGGCAGTAATCAGCGCCCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTgaga                                        <  1:86376/148‑1 (MQ=255)                                                                                                                    ccAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCAc                                   <  4:59796/147‑1 (MQ=255)                                                                                                                    caaGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTTACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCTATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTACCGTTGAGACGCAc                                   <  1:215997/145‑1 (MQ=255)                                                                                                                     cAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTg                                >  8:99269/1‑149 (MQ=255)                                                                                                                           tCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAac                                                               >  4:184413/1‑112 (MQ=255)                                                                                                                           tCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAac                                                               <  3:184413/112‑1 (MQ=255)                                                                                                                           tCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGcc                          >  5:251870/1‑149 (MQ=255)                                                                                                                            cAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTg                                           >  6:70506/1‑131 (MQ=255)                                                                                                                            cAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTg                                           <  5:70506/131‑1 (MQ=255)                                                                                                                              aTGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTg                                                    >  3:289295/1‑120 (MQ=255)                                                                                                                              aTGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTg                                                    <  4:289295/120‑1 (MQ=255)                                                                                                                                    aGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCgcgcgc                 >  5:99803/1‑149 (MQ=255)                                                                                                                                    aGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCgcgcgc                 >  5:196682/1‑149 (MQ=255)                                                                                                                                         cTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGa            <  5:197280/149‑1 (MQ=255)                                                                                                                                                 gcTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGAc     <  1:342957‑M2/146‑1 (MQ=255)                                                                                                                                                  cTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGAccc   <  2:108940‑M2/148‑1 (MQ=255)                                                                                                                                                   tgtgACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCcg  >  5:306802/1‑149 (MQ=255)                                                                                                                                                   tgtgACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCcg  >  4:8170/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGCCTTGCCAGAAGCCAGGGCGCGAGAGGTATTGGCCTGGCGTGCCGATGAGCGTGCCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCG  >  NC_002947/3693001‑3693295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.