New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594092 =	62 (1.050)	3 (0.060)	3/206	NT	7.9%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	21 (0.450)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

GCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATC  >  NC_002947/5594039‑5594324                                                                                                                                                   |                                                                                                                                            gctggGGTATGTCATGGTCATGTCCGCTGTTGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAg                                                                                                                                           <  6:266482/149‑1 (MQ=25)        gATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGAGAGCCAACACCGGCAAAGCCGGTGCCATGCGCCGCAGTGCATGCTTCGCGGGCAAGCCCGCACCCACAGGGTAAGGtgctgg                                                                                                                                    >  4:213213/1‑148 (MQ=37)         aTGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCg                                                                                                                                   >  1:293926/1‑149 (MQ=255)             catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCCGTGCCATGCACCCCAGGGCTTGCTTAGCGGGCAAGCCCGCGCACACACGGTAAGGtgcggccggt                                                                                                                                >  4:288483/1‑144 (MQ=25)                       tCCGCTGGTGTGATGTTAAGTGGCAAACACCACCCTTTGGGAGCGGGCTTGCCCGCGAAAACCGGCAAAGCCGGTGCAATGCACCGCAGTGCTTGATTCGCGGGAAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                                                      <  4:120291/148‑1 (MQ=25)                       tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                                                     <  7:200932/149‑1 (MQ=255)                         cGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTgg                                                                                                                    >  5:165241/1‑148 (MQ=255)                              gcgTGATGTTAAGGCCCACACACCACCCTGGGGGAGCGGGCGGGCCCGCTAACACCGCCAACGCCGGTGCCATGCACCGCAGTCCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgc                                                                                                              <  8:211459/147‑1 (MQ=25)                                    tGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctggctg                                                                                                        >  8:197582/1‑149 (MQ=255)                                      ttAAGTGGCATCCACCACCCTGTGGGTGCGGGCTTCCCCGCCAACACCGGCAACGCCGGTGCCATGCACCGCAGTGCTTGCTGCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGcc                                                                                                      <  5:316587/149‑1 (MQ=37)                                         aGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTc                                                                                                   <  6:165241/149‑1 (MQ=255)                                              aaTACACCACCCTGTGGGAGCGGGCTTGCCCGCTAACACCGTAAACGCGGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                                                                              <  2:228868/148‑1 (MQ=37)                                               aTACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCg                                                                                             >  3:284163/1‑149 (MQ=255)                                                     caccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCg                                                                                       <  7:197582/149‑1 (MQ=255)                                                         cgGTGGGAGCGGGCTTGCCCGCTAACACCGGCAACGCCGGTGCCATGCACCGCTGTGCTTGCTGCGCGGCCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                                   >  3:288483‑M1/3‑149 (MQ=255)                                                         CTGGGGTAGCGGTCTCCCCCGCTAACACCGGCAAACCCGGTGCCTTGCACCGCAGTGCTTGCTGCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                                   >  7:67802‑M1/1‑149 (MQ=255)                                                                     GCTTGCCCGCGAACACCGGCAACGCCGGCGCCATGCACCGCCGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGc                                                                       >  3:213213‑M1/1‑149 (MQ=255)                                                                         gcccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc                                                                   >  6:3021‑M2/75‑149 (MQ=255)                                                                           ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                 <  5:3021‑M2/77‑1 (MQ=255)                                                                           ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                 >  7:18937‑M2/73‑149 (MQ=255)                                                                           CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGc                                                                                      >  6:128454‑M1/1‑128 (MQ=255)                                                                           CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGc                                                                                      <  5:128454‑M1/128‑1 (MQ=255)                                                                           CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                 <  6:55639‑M1/149‑1 (MQ=255)                                                                           CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGG‑CAAGGCCGCTCCCACAGGGGAAGGTGCTGGGGGTTAGCCTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAGCCGCTAGGCCTGCTAACGGATGCCtt                                                                <  8:316779‑M1/149‑1 (MQ=255)                                                                               GAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                                             <  4:42625‑M1/149‑1 (MQ=255)                                                                                AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTc                                                            <  5:10346‑M1/149‑1 (MQ=255)                                                                                AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGGAAGGTGCTGCGGGTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAGGCCTTGCTc                                                            <  5:10351‑M1/149‑1 (MQ=255)                                                                                       gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                                          >  6:115135/1‑112 (MQ=255)                                                                                       gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                                          <  5:115135/112‑1 (MQ=255)                                                                                         aaaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTca                                                    >  3:163572/1‑148 (MQ=255)                                                                                            gCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACttt                                                                                                                        <  5:280502/77‑1 (MQ=255)                                                                                            gCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACttt                                                                                                                        >  6:280502/1‑77 (MQ=255)                                                                                              cGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGATCCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCa                                              <  1:75784/149‑1 (MQ=255)                                                                                                      tGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                                       >  2:93165/1‑148 (MQ=255)                                                                                                             cAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTgg                               <  4:163572/149‑1 (MQ=255)                                                                                                                          gcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACg                  >  2:192909‑M2/26‑149 (MQ=255)                                                                                                                                 agcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTcc           <  4:284163‑M2/131‑1 (MQ=255)                                                                                                                                  gcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCt          <  5:55639‑M2/132‑1 (MQ=255)                                                                                                                                   cccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTg         >  3:88298‑M2/17‑149 (MQ=255)                                                                                                                                      gctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGt      <  3:181791‑M2/136‑1 (MQ=255)                                                                                                                                          ccacagggtCAGGTGCTGCGGTGTAGACGTTGGGGGACAGCTGGCTGCCTTCCGGGCGGAACCGCTCGGCCTGCTCACGCCTGCCTTGCTCGACCGTCACATCCACGGCCTCGCTCTTGGCAGCGTACTCACGCACTTCCTGGGGGATc  <  6:10351‑M2/140‑1 (MQ=255)                                                                                                                                          ccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATc  <  6:10346‑M2/140‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                            GCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATC  >  NC_002947/5594039‑5594324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.