New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6058611	52 (0.880)	3 (0.050)	3/252	NT	5.7%	coding (1808/2079 nt)	recG	junction‑specific ATP‑dependent DNA helicase
	?	NC_002947	= 6058637	50 (0.880)					coding (1834/2079 nt)	recG	junction‑specific ATP‑dependent DNA helicase

CTGATGATCATCGAGAACCCCGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGCCGACCTGCTGCCGG  >  NC_002947/6058490‑6058778                                                                                                                                                     |                                                                                                                                               cTGATGATCATCGAGAACCCCGAGCGCCTGGGCCTTGCGCAGTTGGACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCGGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCAt                                                                                                                                               >  6:15670‑M2/1‑148 (MQ=255)  tgatgaTCATCGAGAACCCCGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGTTCAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCAt                                                                                                                                               <  1:286113‑M2/149‑2 (MQ=255)     tgatCATCGAGAACCCCGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCAtgcga                                                                                                                                           >  1:93684‑M2/1‑144 (MQ=255)           tcGAGAACCCCGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGAc                                                                                                                                      >  6:249871/1‑148 (MQ=255)                    ccGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGc                                                                                                                            >  3:367575/1‑149 (MQ=255)                     cGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCt                                                                                                                           >  3:221243/1‑149 (MQ=255)                       aGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTtc                                                                                                                         <  2:112268/149‑1 (MQ=255)                        gcgcCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTtca                                                                                                                        <  5:232858/149‑1 (MQ=255)                          gcCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCtt                                                                                                                          >  6:53175/1‑145 (MQ=255)                          gcCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCtt                                                                                                                          <  5:53175/145‑1 (MQ=255)                                   ttGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGa                                                                                                              >  6:312173/1‑148 (MQ=255)                                   ttGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGCGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGa                                                                                                              >  5:8602/1‑148 (MQ=255)                                    tGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGaa                                                                                                             >  6:90056/1‑148 (MQ=255)                                       gcAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGa                                                                                                              >  2:217299/1‑144 (MQ=255)                                       gcAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGa                                                                                                              <  1:217299/144‑1 (MQ=255)                                             gCACCAGCTGCGTGG‑CAGGGTTGGCCAGGGCAGCGCCGTGAGCCATTGCGTGCTCTTGTACCTTAGCTCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCtt                                                                                                    <  1:120298/148‑1 (MQ=255)                                              cACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTg                                                                                                   >  2:194817/1‑148 (MQ=255)                                              cACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTg                                                                                                   <  1:66781/148‑1 (MQ=255)                                               aCCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGaa                                                                                                 <  5:90056/149‑1 (MQ=255)                                                ccAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAAc                                                                                                >  7:200710/1‑149 (MQ=255)                                                   gcggCGTGG‑TAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTTCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCGGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGc                                                                                             <  4:221243/146‑1 (MQ=255)                                                   gCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCtt                                                                                                                          <  6:240739/120‑1 (MQ=255)                                                   gCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCtt                                                                                                                          >  5:240739/1‑120 (MQ=255)                                                       cGTGG‑CAGTGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGGGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGATCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTg                                                                                          <  6:34455/148‑1 (MQ=255)                                                       cGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGt                                                                                           <  4:367575/147‑1 (MQ=255)                                                       cGTGG‑CAGGGTTGGCCGCGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGt                                                                                           <  6:8602/147‑1 (MQ=255)                                                             cAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCgg                                                                                    <  8:200710/149‑1 (MQ=255)                                                              aGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCG‑AAAAGACCTTGAACTGCGTGGCCCGGGc                                                                                  <  8:340970/149‑1 (MQ=255)                                                                    ggCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCgaga                                                                              <  1:194817/148‑1 (MQ=255)                                                                     gCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATg                                                                            >  4:136667/1‑149 (MQ=255)                                                                        ggggCAGCTCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTc                                                                         <  3:283149/149‑1 (MQ=255)                                                                        ggggCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTc                                                                         >  4:283149/1‑149 (MQ=255)                                                                         gggCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCg                                                                        <  6:34436/149‑1 (MQ=255)                                                                                  cGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGc                                                               >  2:132417/1‑148 (MQ=255)                                                                                        ccATTGTGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGAc                                                          >  5:310215/1‑147 (MQ=255)                                                                                        ccATTGTGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGAc                                                          <  6:310215/147‑1 (MQ=255)                                                                                         cATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCg                                                                        >  4:287741/1‑133 (MQ=255)                                                                                                   tgctgTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGAc                                                          >  5:185932/1‑136 (MQ=255)                                                                                                   tgctgTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGAc                                                          <  6:185932/136‑1 (MQ=255)                                                                                                   tgctgTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAg                                             >  2:43554/1‑149 (MQ=255)                                                                                                       ggcccaccCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGc                                                                                  <  4:420/106‑1 (MQ=255)                                                                                                        tACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTc                                          >  2:86412/1‑147 (MQ=255)                                                                                                              ccgccgCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGc                                  <  3:136667/149‑1 (MQ=255)                                                                                                                 ccgcTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCAtgcgacagcggcgggtggtacagcagcacgcaatggctcacggcgctgccccggccaaccctgccacgcagctggtgcaactgcgcaaggcccaggcgctcggggttct                                   >  1:233560‑M2/1‑37 (MQ=255)                                                                                                                 ccgcTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCAtgcgacagcggcgggtggtacagcagcacgcaatggctcacggcgctgccccggccaaccctgccacgcagctggtgcaactgcgcaaggcccaggcgctcggggttct                                   <  2:233560‑M2/146‑110 (MQ=255)                                                                                                                  cgcTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGAc                              >  7:11369/1‑149 (MQ=255)                                                                                                                   gcTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCAtgcgacagcggcgggtggtacagcagcacgcaatggctcacggcgctgccccggccaaccctgccacgcagctggtgcaactgcgcaaggcccaggcgctcggggttctcgat                               <  8:161299‑M2/148‑114 (MQ=255)                                                                                                                   gcTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGAcc                             <  5:312173/149‑1 (MQ=255)                                                                                                                    cTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCt                            <  2:286113/149‑1 (MQ=255)                                                                                                                      gTCGCAGATCGGCCGCGAGCGCTTGGGGGTCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGa                          >  1:21661/1‑149 (MQ=255)                                                                                                                          cAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCGTGCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGATgc                       <  1:86412/149‑1 (MQ=255)                                                                                                                             aTCGGCCGCGAGCGCTTGGGGATCATGCTCGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGGGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGa                   <  8:96645/149‑1 (MQ=255)                                                                                                                                ggCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGGCTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGc                <  5:249871/149‑1 (MQ=255)                                                                                                                                      gAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTc                                                                         <  6:345827/87‑1 (MQ=255)                                                                                                                                      gAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTc                                                                         >  5:345827/1‑87 (MQ=255)                                                                                                                                            ttGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGCCGACCTGCTgcc    >  5:372692/1‑149 (MQ=255)                                                                                                                                              ggggATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGCCGACCTGCTgccgg  >  7:15038/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               CTGATGATCATCGAGAACCCCGAGCGCCTGGGCCTTGCGCAGTTGCACCAGCTGCGTGG‑CAGGGTTGGCCGGGGCAGCGCCGTGAGCCATTGCGTGCTGCTGTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGCTTGGGGATCATGCGAGAGACCAACGACGGCTTCATCATCGCCGAAAAAGACCTTGAACTGCGTGGCCCGGGCGAGATGCTCG‑GCACCCGCCAGACCGGTCTGCTGCAGTTCAAGGTCGCCGACCTGATGCGCGACGCCGACCTGCTGCCGG  >  NC_002947/6058490‑6058778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.